View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18456_low_7 (Length: 378)
Name: NF18456_low_7
Description: NF18456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18456_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 10 - 360
Target Start/End: Complemental strand, 48469392 - 48469041
Alignment:
| Q |
10 |
acatcatcattcttccccttccccttattattcttcttcatctgtttcttcaaaaactcctccgccgttttctcaagcttcctatcttcttccccttctc |
109 |
Q |
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| T |
48469392 |
acatcaccattcttccccttccccttattattcttcttcatctgtttcttcaaaaactcctccgccgttttctcaagcttcctatcttcttccccttctc |
48469293 |
T |
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| Q |
110 |
tccactcctccaacctcttctccgcattaacatgcctcaaccttctcccactcatatccctacaagcgtcgaagttattcgtcttcttctg-ccagcttt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
48469292 |
tccactcctccaacctcttctccgcattaacatgcctcaaccttctcccactcatatccctacaagcgtcgaagttattcgtcttcttctgcccagcttt |
48469193 |
T |
|
| Q |
209 |
cgtcgctgctccacgaagcaacgatccgaatcctcctttcccacctttcagacgaagaagaagacgaacggaggggaacatgtttccaccttccggcgaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469192 |
cgtcgctgctccacgaagcaacgatccgaatcctcctttcccacctttcagacgaagaagaagacgaacggaggggaacatgtttccaccttccggcgaa |
48469093 |
T |
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| Q |
309 |
caacatatctccgaattatcatcgttgaggtggcggaaaccggtgacgaggc |
360 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48469092 |
caacatatctccgaattatcatcgttgaggtggcggaaaccggtgacgaggc |
48469041 |
T |
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