View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_high_12 (Length: 351)
Name: NF18457_high_12
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Original strand, 1356883 - 1357232
Alignment:
| Q |
1 |
tgccatctttttcatgtattgcagtaacaacattcattcattcatggatgacaagaaaaacaaacctcttcatgttgtcatgtttccatggatagccatg |
100 |
Q |
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| T |
1356883 |
tgccatctttttcatgtattgcagcaacaacattcattcattcatggataacaagaaaaacaaacctcttcatgttgtcatgtttccatggatagccatg |
1356982 |
T |
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| Q |
101 |
ggacacatgtacccatgttttgaggtttccaagattctttcacaaaatggtcactttgtcacactcatatctactccttcaatcatagatcgtcttccta |
200 |
Q |
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| T |
1356983 |
ggacacatgtacccatgttttgaggtttccaagattctttcacaaaatggtcactttgtcacactcatatctactccttcaatcatagatcgtcttccta |
1357082 |
T |
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| Q |
201 |
aactctcacaaaccctttcaccatttgttaatctcatcaaacttcccttatcatcttacattgacaaaaaccatcttccaacaaatgcagattcaaccat |
300 |
Q |
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| T |
1357083 |
aactctcacaaaccctttcaccattttttaatctcatcaaacttcccttatcatcttacattgacaaaaaccatcttccaacaaatgcagattcaaccat |
1357182 |
T |
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| Q |
301 |
ggacattccctccaacaaactctattaccttaaactagcctatgattctc |
350 |
Q |
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| T |
1357183 |
ggacattccctccaacaaactctattaccttaaactagcctatgattctc |
1357232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 12845690 - 12845785
Alignment:
| Q |
60 |
acaaacctcttcatgttgtcatgtttccatggatagccatgggacacatgtacccatgttttgaggtttccaagattctttcacaaaatggtcact |
155 |
Q |
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| T |
12845690 |
acaagcctcttcatgttgtaatggttccatggctagctatgggacacatatacccttattttgagttggccaagattcttgctcaaaagggtcact |
12845785 |
T |
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