View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_high_16 (Length: 325)
Name: NF18457_high_16
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_16 |
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| [»] scaffold1033 (1 HSPs) |
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| [»] scaffold1029 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 81 - 316
Target Start/End: Original strand, 28569266 - 28569501
Alignment:
| Q |
81 |
aaacacgtgattgtatgcagcttgggacacgatactaaatatgaacacttcttacaatccaaatttgaattttatcccgtcatgctgtgagaggctaagc |
180 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
28569266 |
aaacacgtgattgtatgcagcttgggacacgatactaaatatggacacttcttacaattcaaatttgaattttatcccgtcatgctgtgagaggctaagc |
28569365 |
T |
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| Q |
181 |
gcttgtgctttaccaaacttcgtttgnnnnnnnnnnnnncttataaaatagtagtaatatgttgaatcaagaatgacatattaaaaacttatttggtgtt |
280 |
Q |
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||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28569366 |
gcttgtgctttaccaaacttcctttgtttttttctttttcttataaaatagtagtaatatgttgaatcaagaatgacatattaaaaacttatttggtgtt |
28569465 |
T |
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| Q |
281 |
ggtttcaagaatgacatatttttaatttcgagaata |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
28569466 |
ggtttcaagaatgacatatttttaatttcgagaata |
28569501 |
T |
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Target: scaffold1033 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 2417 - 2381
Alignment:
| Q |
223 |
ataaaatagtagtaatatgttgaatcaagaatgacat |
259 |
Q |
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||||||||||||||||| || |||||||||||||||| |
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| T |
2417 |
ataaaatagtagtaatacgtggaatcaagaatgacat |
2381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 2417 - 2381
Alignment:
| Q |
223 |
ataaaatagtagtaatatgttgaatcaagaatgacat |
259 |
Q |
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||||||||||||||||| || |||||||||||||||| |
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| T |
2417 |
ataaaatagtagtaatacgtggaatcaagaatgacat |
2381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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