View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_18 (Length: 302)
Name: NF18457_high_18
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 22 - 286
Target Start/End: Original strand, 3480601 - 3480865
Alignment:
| Q |
22 |
gcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacataaatttgatataagttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480601 |
gcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacataaatttgatataagttg |
3480700 |
T |
|
| Q |
122 |
aaaagataacaagtcatttagcacttaaacaaataacaacagaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480701 |
aaaagataacaagtcatttagcacttaaacaaataacaacagaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcat |
3480800 |
T |
|
| Q |
222 |
tttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
286 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3480801 |
tttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
3480865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 162 - 286
Target Start/End: Original strand, 3456354 - 3456478
Alignment:
| Q |
162 |
agaagaaagaaactaaatactcgttgtagtatacctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
261 |
Q |
| |
|
|||||||| |||| ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3456354 |
agaagaaataaacacaatactcactgtaatatacctgatggccaataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaag |
3456453 |
T |
|
| Q |
262 |
aatctgtgacagttcctccacaggt |
286 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
3456454 |
aatctgtgacagttcctccacaggt |
3456478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 104
Target Start/End: Original strand, 3456210 - 3456292
Alignment:
| Q |
22 |
gcaaacacaaatttagcattcaaaacgatgaatcaactaaaattacaataaatgagatataatgtaaccattgcacataacat |
104 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||||||||||| | |||| | || ||||||| |||||||| |||||||||| |
|
|
| T |
3456210 |
gcaaaaacaaatttagcatccaaaatgatgaatcaactaaaacttaaatagaagatatataatttaaccattacacataacat |
3456292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 195 - 286
Target Start/End: Complemental strand, 48694426 - 48694335
Alignment:
| Q |
195 |
cctgatggcctataacaacaggtgcattttgaagtataaaatgtaagaaattatctgctctcttaagaatctgtgacagttcctccacaggt |
286 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || || ||||| || |||||| |
|
|
| T |
48694426 |
cctgatggccaataacaacaggagcattttggagtataaaatgcaagaaattatctgctctcttcagaatttgagagagttcttcaacaggt |
48694335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University