View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18457_high_22 (Length: 267)

Name: NF18457_high_22
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18457_high_22
NF18457_high_22
[»] chr1 (5 HSPs)
chr1 (16-265)||(40689548-40689797)
chr1 (73-137)||(34710335-34710399)
chr1 (73-137)||(34713959-34714023)
chr1 (65-105)||(27509163-27509203)
chr1 (73-137)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (54-130)||(7687870-7687946)
chr7 (60-132)||(40243778-40243850)
[»] chr2 (2 HSPs)
chr2 (52-126)||(41234713-41234787)
chr2 (53-105)||(35505956-35506008)
[»] chr4 (1 HSPs)
chr4 (56-145)||(20926000-20926089)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 40689797 - 40689548
Alignment:
Q  16 atataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689797 atataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttg 40689698  T
Q  116 catgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattc 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689697 catgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgtagttcatcattc 40689598  T
Q  216 caccatctaaatcatcggtgttctttgttgatgattcctttgcttctcct 265  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  40689597 caccatctaaatcatcagtgttctttgttgatgattcctttgcttgtcct 40689548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  73 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 137  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 137
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  73 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 137  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  65 tgacttgctctatggccaccaagggcttgaaatgaagggaa 105  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 137
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  73 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 137  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  54 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 130  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 132
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  60 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 132  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 126
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  52 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 126  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  53 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 105  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  56 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 145  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

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