View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_high_24 (Length: 257)
Name: NF18457_high_24
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_24 |
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| [»] scaffold1194 (1 HSPs) |
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Alignment Details
Target: scaffold1194 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold1194
Description:
Target: scaffold1194; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 150 - 6
Alignment:
| Q |
19 |
taaatggcgtgcttggaccgattaaggtacgcgtgagagtattctaatcctattctattgttcctaatcctgattaatattgtactgctaatatattcgt |
118 |
Q |
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| T |
150 |
taaatggcgtgcttggaccagttaaggtacgcgtgagagtattctaatcctattctattgttcctaatccttactaatattgtactgctaatatattcgt |
51 |
T |
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| Q |
119 |
taattacttaaggctttcggatatctgttaaaacagattacctaa |
163 |
Q |
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| T |
50 |
taattacttaaggctttcggttatctgttaaaactaattacctaa |
6 |
T |
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Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 19 - 163
Target Start/End: Complemental strand, 16529324 - 16529176
Alignment:
| Q |
19 |
taaatggcgtgcttggaccgattaaggtacg--cgtg--agagtattctaatcctattctattgttcctaatcctgattaatattgtactgctaatatat |
114 |
Q |
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| T |
16529324 |
taaatggcgtgcttgggccagttaaggtacgtgcgtgtcagagtattctactcctattctattgttcctaatcctgattactattgtactgctaatatat |
16529225 |
T |
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| Q |
115 |
tcgttaattacttaaggctttcggatatctgttaaaacagattacctaa |
163 |
Q |
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| T |
16529224 |
tggttagttacttaaggctttcggttttctgttaaaacagattacctaa |
16529176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 162 - 249
Target Start/End: Complemental strand, 16570570 - 16570483
Alignment:
| Q |
162 |
aaatttgtatccattactagttcaatcttattcaaattttagtttatgtatgtatatgaaatatttctgtatttaacaggcctatgct |
249 |
Q |
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| T |
16570570 |
aaatttgtatccattacttgttcaatcttattcaaattttaatttatttatgtatatgaaatatttctgtatttaacaggcctatgct |
16570483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 74 - 163
Target Start/End: Complemental strand, 16570694 - 16570605
Alignment:
| Q |
74 |
tattgttcctaatcctgattaatattgtactgctaatatattcgttaattacttaaggctttcggatatctgttaaaacagattacctaa |
163 |
Q |
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| T |
16570694 |
tattgttcctaatccttactaatattgtactgctaatatattcgttaattacttaaggctttcggttatctgttaaaactaattacctaa |
16570605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 16529129 - 16529061
Alignment:
| Q |
181 |
gttcaatcttattcaaattttagtttatgtatgtatatgaaatatttctgtatttaacaggcctatgct |
249 |
Q |
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| T |
16529129 |
gttcaatcttattcaaatttcaatttaggcgtgtatatgaaatacttctgtatttaacaggcctatgct |
16529061 |
T |
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