View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_3 (Length: 551)
Name: NF18457_high_3
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 395; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 103 - 538
Target Start/End: Complemental strand, 26417465 - 26417030
Alignment:
| Q |
103 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26417465 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcaataatattacatggtagacgtaagga |
26417366 |
T |
|
| Q |
203 |
ttttaaataagttctaacctacaaagnnnnnnngttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
302 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417365 |
ttttaaataagttctaacctacaaagtttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcatg |
26417266 |
T |
|
| Q |
303 |
gtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
402 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417265 |
gtgctatcttcatgtccaataagagtactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtcaa |
26417166 |
T |
|
| Q |
403 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgca |
502 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417165 |
ggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggttttttaagcgataacagatggcggcatgaacattgctcctcgtgca |
26417066 |
T |
|
| Q |
503 |
tatgtttcatctggaaagcagttccctgcacaggtt |
538 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
26417065 |
tatgtttcatctggaaagcagttccctgcacaggtt |
26417030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 85
Target Start/End: Complemental strand, 26417517 - 26417451
Alignment:
| Q |
19 |
attacgctacacttctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
85 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26417517 |
attacgctacacttctcacaagtgtactataatatgtaatgcatatgtataacattcactatttgct |
26417451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 103 - 538
Target Start/End: Original strand, 27983503 - 27983939
Alignment:
| Q |
103 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
27983503 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
27983602 |
T |
|
| Q |
203 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
301 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
27983603 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
27983702 |
T |
|
| Q |
302 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
401 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
27983703 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
27983802 |
T |
|
| Q |
402 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| |
|
|
| T |
27983803 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgc |
27983902 |
T |
|
| Q |
502 |
atatgtttcatctggaaagcagttccctgcacaggtt |
538 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
27983903 |
atatgtttcatctggacagcagttccctgcacaggtt |
27983939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 103 - 538
Target Start/End: Original strand, 28070033 - 28070469
Alignment:
| Q |
103 |
cattcactatttgcttcttgaattgaacttggctcttgtaattgaaatttacctgtccgtgtgctaatttttcattaatattacatggtagacgtaagga |
202 |
Q |
| |
|
||||||||||||||||||||||| |||||| || |||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| |||| ||||||| |
|
|
| T |
28070033 |
cattcactatttgcttcttgaatggaacttcgcccttgtaattgaaatttgcttgtccatgtgctaatttttcaataatattgcatagtaggtgtaagga |
28070132 |
T |
|
| Q |
203 |
ttttaaataagttctaacctacaaagnnnnnnn-gttagaacaaaaatggacgccggagatttgtgcaaaaataaggggtctggattttttcctgagcat |
301 |
Q |
| |
|
|||||| ||||||||||||| || || |||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
28070133 |
ttttaagtaagttctaaccttcacagttttttttgttagaacgaaaatggacgccggagatttgtgcaaaaataaggagtctggaatttttcctgagcat |
28070232 |
T |
|
| Q |
302 |
ggtgctatcttcatgtccaataggattactttgaaagaatgctttgagaggaatttgtttgggttaccgggtggtttttctgattttattaaaaacgtca |
401 |
Q |
| |
|
||||| ||||||||||||||||| | |||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
28070233 |
ggtgccatcttcatgtccaatagaagtactttgaaagaatgctttgagaggagtttgtttgggctaccgggtagtttttctgattttgttaaaaacgtca |
28070332 |
T |
|
| Q |
402 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcgataacagatggcggcatgaacattgctcctcgtgc |
501 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| |||||| ||| |
|
|
| T |
28070333 |
aggcaggaatgattttgttccttttcgaatttgaagagaggaaacttcatggggtttttgaagcaataacagatggtggcatgaatatttctcctcatgc |
28070432 |
T |
|
| Q |
502 |
atatgtttcatctggaaagcagttccctgcacaggtt |
538 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
28070433 |
atatgtttcatctggacagcagttccctgcacaggtt |
28070469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 27983451 - 27983517
Alignment:
| Q |
19 |
attacgctacacttctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
85 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
27983451 |
attacactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgct |
27983517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 28069981 - 28070047
Alignment:
| Q |
19 |
attacgctacacttctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttgct |
85 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
28069981 |
attacactacacttctcacaagtgtactataatatgtaatgcatatgcataacattcactatttgct |
28070047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 27982093 - 27982143
Alignment:
| Q |
33 |
ctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttg |
83 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
27982093 |
ctcataagtgtattataatatgaaatgcatatgtataacatccactatttg |
27982143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 83
Target Start/End: Original strand, 28068623 - 28068673
Alignment:
| Q |
33 |
ctcacaagtgtactataatatgtaatgcatatgtataacgttcactatttg |
83 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||||||||||| | ||||||||| |
|
|
| T |
28068623 |
ctcataagtgtattataatatgaaatgcatatgtataacatccactatttg |
28068673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University