View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_high_35 (Length: 214)
Name: NF18457_high_35
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_35 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 40063080 - 40063278
Alignment:
| Q |
1 |
catgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaa |
100 |
Q |
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| T |
40063080 |
catgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggtgaggcttgggtaaatggacaa |
40063179 |
T |
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| Q |
101 |
agcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
199 |
Q |
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| T |
40063180 |
agcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
40063278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 40093711 - 40093909
Alignment:
| Q |
1 |
catgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaa |
100 |
Q |
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| T |
40093711 |
catgttgcattagacaaactttgatgctccatccggcagtaatccagttgtgattgacttcacagggatgggaaaaggcgaggcttgggtaaatggacaa |
40093810 |
T |
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| Q |
101 |
agcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
199 |
Q |
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| T |
40093811 |
agcattgggcgatactggcctacatatgttgcttcaaatgtcgattgcacagactcatgcaactacagaggaccttttactcaaaccaaatgtcacatg |
40093909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 40081431 - 40081611
Alignment:
| Q |
1 |
catgttgcattagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaa |
100 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40081431 |
catgttgcactagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggtgaggcttgggtaaatggacaa |
40081530 |
T |
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| Q |
101 |
agcattgggcgatactggcctacatatgttgcttcaaatgccgattgcacagactcatgcaactacagaggaccttttact |
181 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||| |
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| T |
40081531 |
agcattgggcgatactggcctacatatgtcgcttcaaatgccggttgcacagactcatgcaactatagaggaccttatact |
40081611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 11 - 126
Target Start/End: Complemental strand, 22012756 - 22012641
Alignment:
| Q |
11 |
tagacaaactttgatgctccatccggcagtaatccagttgcgattgacttcacggggatgggaaaaggcgaggcttgggtaaatggacaaagcattgggc |
110 |
Q |
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||||| ||||||| |||||| ||||| ||||| || ||||| || |||||||||||||||||||||||||| |||||||| || ||||| |||||||||| |
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| T |
22012756 |
tagacgaactttgttgctccctccggaagtaacccggttgcaatcgacttcacggggatgggaaaaggcgaagcttgggtgaacggacagagcattgggc |
22012657 |
T |
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| Q |
111 |
gatactggcctacata |
126 |
Q |
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|||||||||| ||||| |
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| T |
22012656 |
gatactggccaacata |
22012641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 108
Target Start/End: Complemental strand, 44356214 - 44356174
Alignment:
| Q |
68 |
atgggaaaaggcgaggcttgggtaaatggacaaagcattgg |
108 |
Q |
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|||| |||||| || |||||||||||||||||||||||||| |
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| T |
44356214 |
atggcaaaaggtgaagcttgggtaaatggacaaagcattgg |
44356174 |
T |
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