View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_36 (Length: 211)
Name: NF18457_high_36
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_36 |
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| [»] scaffold1033 (3 HSPs) |
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| [»] scaffold1029 (3 HSPs) |
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| [»] scaffold0889 (1 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 28568919 - 28568725
Alignment:
| Q |
1 |
cttacaaaagaaaaactactgataaaataatgtgttgcaatacacatatgcaacatactataacaagcattggcaaactataactaataaattaatgtgt |
100 |
Q |
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|||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
28568919 |
cttacaaaagaaaaactactaataaaataatgtgttacaatacacatatgcaacatactataacaagcattggcaaactataactaataaattaatgtct |
28568820 |
T |
|
| Q |
101 |
tacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgcaatgttcagctataaat |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28568819 |
tacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgcaatgttcagctataaat |
28568725 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 22 - 105
Target Start/End: Complemental strand, 28568996 - 28568913
Alignment:
| Q |
22 |
ataaaataatgtgttgcaatacacatatgcaacatactataacaagcattggcaaactataactaataaattaatgtgttacaa |
105 |
Q |
| |
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|||||||||| |||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| |
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| T |
28568996 |
ataaaataatatgttacaatacacatatgcagcatactataacaagcattggaaaactataactaataaattaatgtcttacaa |
28568913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 50 - 123
Target Start/End: Complemental strand, 28569033 - 28568960
Alignment:
| Q |
50 |
gcaacatactataacaagcattggcaaactataactaataaattaatgtgttacaatacacatatgcagcatac |
123 |
Q |
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||||||||||||||||||||||| | |||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
28569033 |
gcaacatactataacaagcattgcccaactataactaataaaataatatgttacaatacacatatgcagcatac |
28568960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 28586829 - 28586760
Alignment:
| Q |
86 |
aataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaa |
155 |
Q |
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|||||||| ||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||||||| |
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| T |
28586829 |
aataaatttatgtgttacaatatgcatatgctgcatacatattttgaccttcaatcagccagtagctcaa |
28586760 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 86 - 195
Target Start/End: Complemental strand, 28580663 - 28580557
Alignment:
| Q |
86 |
aataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattc-agtagctcaaactaacaaatatcaactatgtgcaatgtt |
184 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| || | ||||||||||| ||||||||| ||| |||| |||||| |
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|
| T |
28580663 |
aataaattaatgtgttacaatgcacatat---gcatacatatgttgaccttcaat-atacaagtagctcaaaagaacaaatatgaaccgtgtgaaatgtt |
28580568 |
T |
|
| Q |
185 |
cagctataaat |
195 |
Q |
| |
|
||||||||| |
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|
| T |
28580567 |
atgctataaat |
28580557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 28575575 - 28575507
Alignment:
| Q |
86 |
aataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaa |
156 |
Q |
| |
|
||||||||||||||||||||| ||||| || ||||||| |||||||||||||||| |||||||||||| |
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| T |
28575575 |
aataaattaatgtgttacaatgcacat--gctgcatacacatgctgaccttcaatctaccagtagctcaaa |
28575507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold1033
Description:
Target: scaffold1033; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 2869 - 2981
Alignment:
| Q |
83 |
actaataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgcaatg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| || ||||||||| |
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| T |
2869 |
actaataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg |
2968 |
T |
|
| Q |
183 |
ttcagctataaat |
195 |
Q |
| |
|
|| | |||||||| |
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|
| T |
2969 |
ttaaactataaat |
2981 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 2854 - 2909
Alignment:
| Q |
3 |
tacaaaagaaaaactactgataaaataatgtgttgcaatacacatatgcaacatac |
58 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |
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| T |
2854 |
tacaaaagaaaaactactaataaattaatgtgttacaatacacatatgcagcatac |
2909 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1033; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 2818 - 2854
Alignment:
| Q |
56 |
tactataacaagcattggcaaactataactaataaat |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
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|
| T |
2818 |
tactataacaagcattggcaaaatataactaataaat |
2854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029 (Bit Score: 69; Significance: 4e-31; HSPs: 3)
Name: scaffold1029
Description:
Target: scaffold1029; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 195
Target Start/End: Original strand, 2869 - 2981
Alignment:
| Q |
83 |
actaataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgcaatg |
182 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | |||| ||||||||| || ||||||||| |
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|
| T |
2869 |
actaataaattaatgtgttacaatacacatatgcagcatacatatgttgaccttcaatcattcagtaacccaaaataacaaataaaaatcgtgtgcaatg |
2968 |
T |
|
| Q |
183 |
ttcagctataaat |
195 |
Q |
| |
|
|| | |||||||| |
|
|
| T |
2969 |
ttaaactataaat |
2981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 3 - 58
Target Start/End: Original strand, 2854 - 2909
Alignment:
| Q |
3 |
tacaaaagaaaaactactgataaaataatgtgttgcaatacacatatgcaacatac |
58 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
2854 |
tacaaaagaaaaactactaataaattaatgtgttacaatacacatatgcagcatac |
2909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1029; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 92
Target Start/End: Original strand, 2818 - 2854
Alignment:
| Q |
56 |
tactataacaagcattggcaaactataactaataaat |
92 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2818 |
tactataacaagcattggcaaaatataactaataaat |
2854 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0889 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0889
Description:
Target: scaffold0889; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 4153 - 4267
Alignment:
| Q |
79 |
tataactaataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgc |
178 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || |||||||||| ||||||||||||||||||||||||||| | ||||||| ||| |||||| |
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|
| T |
4153 |
tataactaataaattaatgtgttccaatgcacat--gctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgc |
4250 |
T |
|
| Q |
179 |
aatgttcagctataaat |
195 |
Q |
| |
|
|||||| | |||||||| |
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|
| T |
4251 |
aatgttaaactataaat |
4267 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 79 - 195
Target Start/End: Original strand, 4357 - 4471
Alignment:
| Q |
79 |
tataactaataaattaatgtgttacaatacacatatgcagcatacatatgctgaccttcaatcattcagtagctcaaactaacaaatatcaactatgtgc |
178 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||| || |||||||||| ||||||||||||||||||||||||||| | ||||||| ||| |||||| |
|
|
| T |
4357 |
tataactaataaattaatgtgttccaatgcacat--gctgcatacatattttgaccttcaatcattcagtagctcaaaagagcaaatatgaaccatgtgc |
4454 |
T |
|
| Q |
179 |
aatgttcagctataaat |
195 |
Q |
| |
|
|||||| | |||||||| |
|
|
| T |
4455 |
aatgttaaactataaat |
4471 |
T |
|
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