View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_6 (Length: 429)
Name: NF18457_high_6
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 423
Target Start/End: Complemental strand, 7705490 - 7705085
Alignment:
| Q |
17 |
cacaggttggtgccatgaatctgcagaattgaatttgtcggtcgctggacacattgtagaaccaaatgaatatttatatgaaactgataaatatgtcttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705490 |
cacaggttggtgccatgaatctgcagaattgaatttttcggtcgctggac-cattgtagaac-aaatgaatatttatatgaaactgataaatatgtcttt |
7705393 |
T |
|
| Q |
117 |
gagcttatatgaagctatttgctgggaccttcataaaaggtgcatattatgattaaacacacatttgatgtcaagtgtcaatctacatatataggtttct |
216 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
7705392 |
gagcttatataaagctatttgctgggaccttcataaaaggtgcatattatgattaaacacacattttatgtcaagtgtcaatctacatatataggtttct |
7705293 |
T |
|
| Q |
217 |
gcagaactattttacttcctgcttatcttgtgctcatactatgaatttgttttgactaaaatgtttaatctcaactaattttgaagtttattgtgtgcaa |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705292 |
gcagaactattttacttcctgcttatcttgtgctcatactatgaatttgttttgactaaaatatttaatctcaactaattttgaagtttattgtgtgcaa |
7705193 |
T |
|
| Q |
317 |
caagaatgctagaaattcc-aaagataacaaagaaagcnnnnnnnnnnnnnnnntggcactgttcagtaagtaaaaagttctgagaaaatgttcaatgat |
415 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7705192 |
caagaatgctagaaactcctaaagataacaaagaaagcaaaaagaaaaaaaaaatggcactgttcagtaagtaaaaagttctgagaaaatgttcaatgat |
7705093 |
T |
|
| Q |
416 |
gatgtcca |
423 |
Q |
| |
|
| |||||| |
|
|
| T |
7705092 |
gttgtcca |
7705085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University