View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_7 (Length: 406)
Name: NF18457_high_7
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 44142409 - 44142032
Alignment:
| Q |
18 |
actacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagaca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
44142409 |
actacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcactcaccactgatccctcagggagaca |
44142310 |
T |
|
| Q |
118 |
taattcaccccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttctgtccgagga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
44142309 |
taattcaccccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagcttcagtccgagga |
44142210 |
T |
|
| Q |
218 |
gcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcagtaattgagtgga |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44142209 |
gcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttcttttctctatttgtatttgttcaataattgagtgga |
44142110 |
T |
|
| Q |
318 |
aatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcat |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44142109 |
aatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcat |
44142032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 50063072 - 50062794
Alignment:
| Q |
18 |
actacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcacagttcattcaccagtgatccctcagggagac- |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||||| ||| |
|
|
| T |
50063072 |
actacagtttttccataccaaatgaaactctgagccatgcctttggctatttttgtttaattcttcatagttcactcaccactgatccctcagggtgacg |
50062973 |
T |
|
| Q |
117 |
----------ataattcaccccatttcctacctttttctccttacccttatcttttatgatttccagctggattccggacttttatgttttctgcagctt |
206 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
50062972 |
tccacacttcataattcaccccatttccaacctttttctccttacccttatcttttatgatttccagctggattgcggacttttatgttttctgcagctt |
50062873 |
T |
|
| Q |
207 |
ctgtccgaggagcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
285 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50062872 |
cagtccgaggagcaaaacatgggttttccttcacattcaataggtatactttcctcacttgagaaaaaacatttctttt |
50062794 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 307 - 395
Target Start/End: Complemental strand, 50062698 - 50062610
Alignment:
| Q |
307 |
aattgagtggaaatgggcgaaagcatggtttgttttcatgagtttatttgggctatatatctttagggccactactgattcggattcat |
395 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
50062698 |
aattgagcggaaatgggcgaaagcatattttgttttcatgagtttatttgggctatatatctttagggctactactgattcggattcat |
50062610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University