View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_high_8 (Length: 374)
Name: NF18457_high_8
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 1322204 - 1322571
Alignment:
| Q |
18 |
gcattgtcactactcactaatatagatatctaaaagttataaatacatacttgtatccaatacatagtgagtagtatctacgtagctttcacaaaaatca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1322204 |
gcattgtcactactcactaatatagatatctaaaagttataaatacatacttgtatccaatacatagtgagtagtatctacgtagctttcacaaaaatca |
1322303 |
T |
|
| Q |
118 |
tatgc-----------aaagtagatgagatcaatatgattgttgaagtggtaaagtaatatataatcactacaagacattggccttgtccatataccaac |
206 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1322304 |
catgcatatttcatgcaaagtagatgagatcaatatgattgttgaagtggtaaagtaatatataatcactacaagacattggccttgtccatataccaac |
1322403 |
T |
|
| Q |
207 |
tacatgatttactcaatttgggaaactgattgcgaaaggattac--tgaattaattaaatattatgatataatattctaatatttcaacaaatcacgtta |
304 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1322404 |
tacatgatttactcaatttgggaaattgattgcgaaaggattactgtgaattaattaaatattatgatataatattataatatttcaacaaatcacgtta |
1322503 |
T |
|
| Q |
305 |
tttaagattttgacaaattttcaggattcaagaaatgttgacacaaaatctaccactttgttttatgt |
372 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
1322504 |
tttaagattttgacaaattttcaggattcaagtaatgttgacataaaatctaccactttgttttatgt |
1322571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 199 - 361
Target Start/End: Original strand, 1325948 - 1326111
Alignment:
| Q |
199 |
ataccaactacatgatttactcaatttgggaaactgattgcgaaaggattactg--aattaattaaatattatgatataatattctaatatttcaacaaa |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| | | |||| |||||| |||||||||||||||||||||| ||| ||||||| |||| || |
|
|
| T |
1325948 |
ataccaactacatgatttactcaatttgggaaattgatagag-aagggttactgtatattaattaaatattatgatataggattataatattccaaccaa |
1326046 |
T |
|
| Q |
297 |
tcacgttatttaagattttgacaaattttcaggattc-aagaaatgttgacacaaaatctaccact |
361 |
Q |
| |
|
|||| || |||||||||||| ||| |||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
1326047 |
tcac-ttttttaagattttgtcaatttttcaggattctaagaaatgttgacacaatatctaccact |
1326111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University