View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_1 (Length: 610)
Name: NF18457_low_1
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 10 - 595
Target Start/End: Complemental strand, 41717947 - 41717365
Alignment:
| Q |
10 |
agaacctgtgctggatgcagctgcacaggagtatgctgaaaaagcaggtgtttatccaccagagatcattgttgaccacagtgtctatctcccccctgca |
109 |
Q |
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| T |
41717947 |
agaacatgtgctggatgcagctgcacaggagtatgctgaaaaagcaggtgtttatccaccagagatcattgttgaccacagtgtctatcttccccctgca |
41717848 |
T |
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| Q |
110 |
cccaagcatcacaatactcacgaaccctactggtaaagttcatgttatagacttctatttaaatattaagcaactgtatggatctgttaatcagggtcct |
209 |
Q |
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| T |
41717847 |
cccaagcatcacaatactcacgaaccttactggtaaagttcatgttacagacttctatttaaatattaagcaactgtatggatctgttaat---ggtcct |
41717751 |
T |
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| Q |
210 |
gcttcttactcatgctgtacctttttcttgattagttacacattctggtcaaaattaatcaagagtttcaaacctaaggttaccatgtttttagttgact |
309 |
Q |
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| T |
41717750 |
gcttcttactcatgctgtacctttttcttgattagttacacattctggtcaaaattaatcaagagtttcaaacctaaggttaccatgtttttagttgact |
41717651 |
T |
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| Q |
310 |
gagcatactagctaaagttgttttattatgggtttgggagactcaataaatcacgacagtaccacaaggtcaaacaactctacagtttgttgcttttgta |
409 |
Q |
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| T |
41717650 |
gagcatactagctaaagttgttttattatgggtttgggagactcaataaatcacgacagtaccacaaggtcaaacaactctacagtttgttgcttttgta |
41717551 |
T |
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| Q |
410 |
ttttcgtgttgatttgacattgagacacgagaaagccttctctgatgaccatctaaacatttgattagttttgtagctgctttaatattcgatatcagtt |
509 |
Q |
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| T |
41717550 |
ttttcgtgttgatttgacattgagacatgagaaagccttctctgatgaccatctaaacatttgattagttgtgtagctgctttaatattcgatatcagtt |
41717451 |
T |
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| Q |
510 |
tcagcatacctgattatatttgtggaaaattcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaat |
595 |
Q |
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| T |
41717450 |
tcagcatacctgattatatttgtggaaaattcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaat |
41717365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 539 - 595
Target Start/End: Original strand, 2420846 - 2420902
Alignment:
| Q |
539 |
ttcagctctggtggggtggtgttggcttctcgtgatggaaagattgtgtgtgaaaat |
595 |
Q |
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| T |
2420846 |
ttcagctctggaggtgtggtattggcttctcatgatggaaagattgtgtttgaaaat |
2420902 |
T |
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