View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_10 (Length: 374)
Name: NF18457_low_10
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 13 - 365
Target Start/End: Complemental strand, 39350893 - 39350544
Alignment:
| Q |
13 |
catcaaaataactgaactgtaataaattctggttcaaggtttaacccattgaaccatcctgtttggtttttaaaacactgtgtttgatctctttaaattt |
112 |
Q |
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| T |
39350893 |
catcaaaataactgaactgtaataaattctggttcaaggtttaaccggttgaaccgtcctgtttggtttttaaaacactgtgtttgatctctttaaattt |
39350794 |
T |
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| Q |
113 |
cattttttaaaagtttaacatggtactatcaatctgacaaaattgaatttctgaatctagagaatgcaacatttgctattcctgatcaagttgttgggat |
212 |
Q |
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| T |
39350793 |
cattttttaaaagtttaacatggtattatcaatctgacaaaattgaatttctgaatctagagaatgcaacatttgctattcctgatcaagttgttgggat |
39350694 |
T |
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| Q |
213 |
ttactttggttgggccaaagttgattcagataggaagtttaagatattggttagcattaatttggacttctccagtgttacctacnnnnnnntagtgagt |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39350693 |
ttactttggttgggccaaagttgattcagataggaagtttaagatattggttagcattaatttggacttctccagtgttacctacaaaaaaatagtgagt |
39350594 |
T |
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| Q |
313 |
actagtcaattactatataactcaacaattccttcatttattctttgatgatg |
365 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39350593 |
actagtcaat---tatataactcaacaattccttcatttattctttgatgatg |
39350544 |
T |
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