View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_11 (Length: 373)
Name: NF18457_low_11
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 69; Significance: 7e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 6917845 - 6917921
Alignment:
| Q |
1 |
tcatgagaacaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
77 |
Q |
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| T |
6917845 |
tcatgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 105 - 331
Target Start/End: Complemental strand, 34821448 - 34821221
Alignment:
| Q |
105 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatgattttatatttaacaatgctgtcatac |
204 |
Q |
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| T |
34821448 |
aataaaaagattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttag |
34821349 |
T |
|
| Q |
205 |
atactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaa |
304 |
Q |
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| T |
34821348 |
attttgaggcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaa |
34821249 |
T |
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| Q |
305 |
tccgaagga-ttgtttgatgcggtgatg |
331 |
Q |
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| T |
34821248 |
tccaaaggatttgtttgatgcggtgatg |
34821221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 77 - 331
Target Start/End: Complemental strand, 38185520 - 38185266
Alignment:
| Q |
77 |
gtgggaatgttggaatgacgcggcatctaataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaat |
176 |
Q |
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| T |
38185520 |
gtgggaatgttggaattgagcggtttataataaaaagatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaat |
38185421 |
T |
|
| Q |
177 |
gattttatatttaacaatgctgtcatacatactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccgg |
276 |
Q |
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||| | | ||||| ||||| || | || ||| | ||| | ||||| |||||||| || | |||||||||||||| || ||| | || | ||||| |
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| T |
38185420 |
gatataacttttaataatgcagtgttggattgtgaggcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccgg |
38185321 |
T |
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| Q |
277 |
cgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtgatg |
331 |
Q |
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| T |
38185320 |
catgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatg |
38185266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 231 - 329
Target Start/End: Original strand, 53562335 - 53562433
Alignment:
| Q |
231 |
aaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtga |
329 |
Q |
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| T |
53562335 |
aaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 22153664 - 22153562
Alignment:
| Q |
229 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
328 |
Q |
| |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22153664 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22153565 |
T |
|
| Q |
329 |
atg |
331 |
Q |
| |
|
||| |
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|
| T |
22153564 |
atg |
22153562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 229 - 331
Target Start/End: Complemental strand, 22209579 - 22209477
Alignment:
| Q |
229 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
328 |
Q |
| |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22209579 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22209480 |
T |
|
| Q |
329 |
atg |
331 |
Q |
| |
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||| |
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| T |
22209479 |
atg |
22209477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 222 - 317
Target Start/End: Original strand, 1557362 - 1557457
Alignment:
| Q |
222 |
gaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgt |
317 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||| ||||||| | ||| || || ||||||||||| |||| ||||||||||||| ||||| |
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| T |
1557362 |
gaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgt |
1557457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 229 - 331
Target Start/End: Original strand, 4903893 - 4903995
Alignment:
| Q |
229 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
328 |
Q |
| |
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||||||| || |||||||| |||| |||||| || ||||||||| |||| |||||||| ||||||| |||||||| ||||||||||||| ||||||| |
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| T |
4903893 |
ttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtg |
4903992 |
T |
|
| Q |
329 |
atg |
331 |
Q |
| |
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||| |
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|
| T |
4903993 |
atg |
4903995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 1557245 - 1557318
Alignment:
| Q |
105 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatga |
178 |
Q |
| |
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||||| ||||| || || || |||||| |||| ||||||| | | |||||||||||||||||||| |||||||| |
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| T |
1557245 |
aataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatga |
1557318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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