View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18457_low_12 (Length: 361)

Name: NF18457_low_12
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18457_low_12
NF18457_low_12
[»] chr7 (2 HSPs)
chr7 (20-351)||(28884458-28884796)
chr7 (122-350)||(28879566-28879794)
[»] chr8 (1 HSPs)
chr8 (122-215)||(11952733-11952826)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 20 - 351
Target Start/End: Complemental strand, 28884796 - 28884458
Alignment:
Q  20 tgtagcttcaacaaaagcaccgtaaatttatgaaattcaccgccaaaccaaacatatgattatagattctccgcagttagaatatttagtagtatgcatg 119  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28884796 tgtagcttcaaaaaaagcaccgtaaatttatgaaattcaccgccaaaccaaacatatgattatagattctccgcagttagaatatttagtagtatgcatg 28884697  T
Q  120 ccttctta-------ccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtg 212  Q
    ||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28884696 ccttcttagttcttaccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtg 28884597  T
Q  213 aaacataacttggtcagagagaccaaactgtttcaatttctcaatggcttcatttccttttttctcatctctagctgtgagcatcaccttgacaccattt 312  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||    
T  28884596 aaacataacttggtcagagagaccaaactgtttcaatttctgaatggcttcattcccttttttctcatctctagctgtaagcaccaccttgacaccattt 28884497  T
Q  313 gaggccaacattttaacagtctcaaatcctatccctttg 351  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28884496 gaggccaacattttaacagtctcaaatcctatccctttg 28884458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 122 - 350
Target Start/End: Complemental strand, 28879794 - 28879566
Alignment:
Q  122 ttcttaccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaacataac 221  Q
    ||||||||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  28879794 ttcttaccaagatatcaagtctcccaaactgtgtcttaacaaattctaccagtgaagtaatactagcagggtcagtgacatcaagttggtgaaacataac 28879695  T
Q  222 ttggtcagagagaccaaactgtttcaatttctcaatggcttcatttccttttttctcatctctagctgtgagcatcaccttgacaccatttgaggccaac 321  Q
    |||||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28879694 ttggtcagagagaccaaactgtttcaatttctgaatggcttcattcccctttttctcatctctagctgtgagcatcaccttgacaccatttgaggccaac 28879595  T
Q  322 attttaacagtctcaaatcctatcccttt 350  Q
    |||||||||||||||||||||||||||||    
T  28879594 attttaacagtctcaaatcctatcccttt 28879566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 11952733 - 11952826
Alignment:
Q  122 ttcttaccaagatatcaagtctcccaaactgtgtcttaaaaaactgtacaagtgaagtaatactagcagagtcagtgacatcaagttggtgaaa 215  Q
    |||||||||||||||||||||| |||||||| ||||||| |||||  || | ||||| |||||||  ||  ||||| ||||||||||| |||||    
T  11952733 ttcttaccaagatatcaagtcttccaaactgagtcttaacaaactcaaccaatgaagcaatactaaaaggatcagtaacatcaagttgatgaaa 11952826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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