View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_22 (Length: 285)
Name: NF18457_low_22
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 8704712 - 8704877
Alignment:
| Q |
18 |
agtactagacagtttccttcctatattttgtttttattcagctaaagccaaaactagcctatgatattatgatcaacctcaaaactctcacacatactat |
117 |
Q |
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| T |
8704712 |
agtactagacaatttccttcctatattttgtttttattcagctaaagccaaaactagcctatgatattatgatcaacctcaaaactctcacacata---- |
8704807 |
T |
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| Q |
118 |
tccctatttccaccattacaaattcatgctttagcttctgaactctgaacaatcaccactttctcttcatatg |
190 |
Q |
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| T |
8704808 |
---ctatttccaccattacaaattcatgctttagcttctgaactctgaacaatcaccactttctcttcatatg |
8704877 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 14 - 101
Target Start/End: Complemental strand, 14372638 - 14372551
Alignment:
| Q |
14 |
aggtagtactagacagtttccttcctatattttgtttttattcagctaaagccaaaactagcctatgatattatgatcaacctcaaaa |
101 |
Q |
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|||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14372638 |
aggtagtagtagacagtttccttcctatgttttgtttttgttcagctaaagccaaaactagcctatgatattatgatcaacctcaaaa |
14372551 |
T |
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