View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_24 (Length: 268)
Name: NF18457_low_24
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 24213234 - 24213000
Alignment:
| Q |
18 |
taacttgatgctgtttaacttttaattttcttcatgtgatccttcttcaacaatcaacatgtcattttaattttacagaattcaagtatttggtcccaaa |
117 |
Q |
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| T |
24213234 |
taacttgatgctgtttaacttttaattttcttcatgtgatccttcttcaacaatcaacgtgtcattttaattttacagaattcaagtatttggtcccaaa |
24213135 |
T |
|
| Q |
118 |
gtcaagtttaaagaattcctacattaagcagcacactataaagcataaagcttcctacacttatcaacaagaaaccttgggatggatctatatatacaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
24213134 |
gtcaagtttaaagaattcctacattaagcagcacactataaagcataaaacttcctacacttatcaacgagaaaccttgggatggatctatatatacaaa |
24213035 |
T |
|
| Q |
218 |
atccttcgattgaaagttatagaagtgaatgaaac |
252 |
Q |
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| T |
24213034 |
atccttcgattgaaagttatagaagtgaatgaaac |
24213000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 7338019 - 7338253
Alignment:
| Q |
18 |
taacttgatgctgtttaacttttaattttcttcatgtgatccttcttcaacaatcaacatgtcattttaattttacagaattcaagtatttggtcccaaa |
117 |
Q |
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||||||||||| |||||| ||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
7338019 |
taacttgatgcggtttaaatttaaatttttttcatgtgatccttcatcaacaatcaacatgtcattttaattttacaaaattcaagtatttggtcccaaa |
7338118 |
T |
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| Q |
118 |
gtcaagtttaaagaattcctacattaagcagcacactataaagcataaagcttcctacacttatcaacaagaaaccttgggatggatctatatatacaaa |
217 |
Q |
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| T |
7338119 |
gtcaagtttaaagagttcctacattaagcagcacactataaagcataaagcttcctacacttatcagcaagaaaccttgggatggatctatatatacaaa |
7338218 |
T |
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| Q |
218 |
atccttcgattgaaagttatagaagtgaatgaaac |
252 |
Q |
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| T |
7338219 |
atccttcgattgaaagttatggaagtgaatgaaac |
7338253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 204 - 252
Target Start/End: Complemental strand, 26726475 - 26726428
Alignment:
| Q |
204 |
tctatatatacaaaatccttcgattgaaagttatagaagtgaatgaaac |
252 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
26726475 |
tctatatatacaaaatccttcgattgaaagttat-gaagtgaatgaaac |
26726428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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