View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_26 (Length: 266)
Name: NF18457_low_26
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_26 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 266
Target Start/End: Original strand, 7767716 - 7767961
Alignment:
| Q |
16 |
aaaatcaagatgaaaagttaagtgtcatacaagagggaagaaaatcagtttctagttcattcaaccaattttattatgtttctactttctacaagagagc |
115 |
Q |
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| T |
7767716 |
aaaatcaagatgaaaagttaagtgtcatacaagagggaagaaaatcagtttctagttcattcaaccaattttattatgtttctactttctacaagagagc |
7767815 |
T |
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| Q |
116 |
aattatgatcctttgatattaaggtgttcaatttttgtatttccatggtataatataatatttgtaatctccgatctttttacttacgataatgatgtca |
215 |
Q |
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| T |
7767816 |
aattatgatcctttgatattaaggtgttcaatttttgtatttccatgg-----tataatatttgtaatctccaatctttttacttacgataatgatgtca |
7767910 |
T |
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| Q |
216 |
taannnnnnnattatgaatctatatatttttgtatgaatatgctaaatgtc |
266 |
Q |
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| T |
7767911 |
taatttttttattatgaatttatatatttttgtatgaatatgataaatgtc |
7767961 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 151
Target Start/End: Complemental strand, 7986723 - 7986681
Alignment:
| Q |
109 |
agagagcaattatgatcctttgatattaaggtgttcaattttt |
151 |
Q |
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| T |
7986723 |
agagagtaattatcatcctttcatattaaggtgttcaattttt |
7986681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 23035690 - 23035647
Alignment:
| Q |
105 |
tacaagagagcaattatgatcctttgatattaaggtgttcaattt |
149 |
Q |
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| T |
23035690 |
tacaatagagtaattatgatcctt-gatattaaggtgttcaattt |
23035647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 33247108 - 33247065
Alignment:
| Q |
105 |
tacaagagagcaattatgatcctttgatattaaggtgttcaattt |
149 |
Q |
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| T |
33247108 |
tacaatagagtaattatgatcctt-gatattaaggtgttcaattt |
33247065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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