View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_32 (Length: 238)
Name: NF18457_low_32
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_32 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 23852850 - 23853078
Alignment:
| Q |
1 |
tagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852850 |
tagattttgagtagggacagtttgaatcaaattgttctcctttttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgct |
23852949 |
T |
|
| Q |
101 |
gcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23852950 |
gcaacttatacctttccatttacaacagtcatttcctttccaagaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttc |
23853049 |
T |
|
| Q |
201 |
ctctcttgttccatgcaaccaaatgatga |
229 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
23853050 |
ctctcttgttccatgcaaccaaatgatga |
23853078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 23752191 - 23752377
Alignment:
| Q |
43 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
142 |
Q |
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|||||||||| ||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
23752191 |
tttgtgggtagcatggattcctaaggtcaattttaacaacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
23752290 |
T |
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| Q |
143 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
229 |
Q |
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| T |
23752291 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagttcaagaagtgcttgcctctcttgttctatgcaaccaaatgatga |
23752377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 43 - 229
Target Start/End: Original strand, 22619584 - 22619770
Alignment:
| Q |
43 |
tttgtgggtaacatggattcctaaggtcaatttttacaacatgtcctgtgatgttgctgcaacttatacctttccatttacaacagtcatttcctttcca |
142 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||| |
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| T |
22619584 |
tttgtgggtagcatggattcctaaggtcaatttttataacatgacctgtaatgttgctgcaacttatacctttccatttacaacattcatttccttccca |
22619683 |
T |
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| Q |
143 |
agaggaaagtctaaataatggatcattaaagcttcctttgatttcaagaagagctttcctctcttgttccatgcaaccaaatgatga |
229 |
Q |
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|||||||||||| ||| ||| |||||||||||||||||||| | | | |||||||| |||||||||||| | ||||||||||||||| |
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| T |
22619684 |
agaggaaagtcttaatgatgtatcattaaagcttcctttgagtgctaaaagagcttgcctctcttgttctaagcaaccaaatgatga |
22619770 |
T |
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