View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18457_low_33 (Length: 238)
Name: NF18457_low_33
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_33 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 8705207 - 8705427
Alignment:
| Q |
1 |
cagctttttcggttgtaaaatcagatgacccagaatggnnnnnnnngtgtcctattgattataagtatgctaagagtaaaaggtttaagaggacaacaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8705207 |
cagctttttcggttgtaaaatcagatgacccagaatggttttttttgtgtcctattgattataagtatgccaagagtaaaaggtttaagaggacaacaaa |
8705306 |
T |
|
| Q |
101 |
tactggtttttggaaagctactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705307 |
tactggtttttggaaagctactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggt |
8705406 |
T |
|
| Q |
201 |
cgtgttcctggtgttaaaagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8705407 |
cgtgttcctggtgttaaaagc |
8705427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 14372520 - 14372300
Alignment:
| Q |
1 |
cagctttttcggttgtaaaatcagatgacccagaatggnnnnnnnngtgtcctattgattataagtatgctaagagtaaaaggtttaagaggacaacaaa |
100 |
Q |
| |
|
|||||| ||| || |||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
14372520 |
cagcttgttccgtggtaaaatcagatgacccagaatggtttttcttgtgtcctattgattacaagtatgcaaagagtaaaaggtttaaaaggacaacaaa |
14372421 |
T |
|
| Q |
101 |
tactggtttttggaaagctactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggt |
200 |
Q |
| |
|
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
14372420 |
aaatggtttttggaaagctactggaaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaaaactcttgtttactataatggt |
14372321 |
T |
|
| Q |
201 |
cgtgttcctggtgttaaaagc |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
14372320 |
cgtgttcctggtgttaaaagc |
14372300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 51 - 191
Target Start/End: Original strand, 8723692 - 8723832
Alignment:
| Q |
51 |
cctattgattataagtatgctaagagtaaaaggtttaagaggacaacaaatactggtttttggaaagctactggtaaggaccggaagattaaggttaggg |
150 |
Q |
| |
|
|||||||| || |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||| | |||||| || |||| | |||||| |
|
|
| T |
8723692 |
cctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaactaataatggtttttggaaagctactggaatggaccgtaacattaggattaggg |
8723791 |
T |
|
| Q |
151 |
gtagcaataatattattgggattaagaagactcttgtttac |
191 |
Q |
| |
|
||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
8723792 |
gtaccaatgaagttattgggattaagaagactcttgtttac |
8723832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 47 - 190
Target Start/End: Original strand, 8740329 - 8740472
Alignment:
| Q |
47 |
gtgtcctattgattataagtatgctaagagtaaaaggtttaagaggacaacaaatactggtttttggaaagctactggtaaggaccggaagattaaggtt |
146 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||||||||| |||||||| |||| ||||||||||||||||||||| || || || | |||||| || |
|
|
| T |
8740329 |
gtgtcctattgaatacaagtatgcaaagagtaaaaggtttaaaaggacaacgaataatggtttttggaaagctactggaaatgatcgtagcattaagatt |
8740428 |
T |
|
| Q |
147 |
aggggtagcaataatattattgggattaagaagactcttgttta |
190 |
Q |
| |
|
|| |||| |||||| |||||||||| |||||||||||||||||| |
|
|
| T |
8740429 |
agaggtaccaataaaattattgggactaagaagactcttgttta |
8740472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 221
Target Start/End: Original strand, 8691037 - 8691147
Alignment:
| Q |
111 |
tggaaagctactggtaaggaccggaagattaaggttaggggtagcaataatattattgggattaagaagactcttgtttactacaatggtcgtgttcctg |
210 |
Q |
| |
|
|||||||| |||||| ||||| |||||||||||||| || | | ||| |||||||||| || || || ||||| | ||| |||||| ||||||||| |
|
|
| T |
8691037 |
tggaaagccactggtcttgaccgtaagattaaggttagaggcactgacaatgttattgggataaaaaaaacacttgtgttctataatggttgtgttcctg |
8691136 |
T |
|
| Q |
211 |
gtgttaaaagc |
221 |
Q |
| |
|
||||||||||| |
|
|
| T |
8691137 |
gtgttaaaagc |
8691147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University