View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18457_low_39 (Length: 222)

Name: NF18457_low_39
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18457_low_39
NF18457_low_39
[»] chr8 (3 HSPs)
chr8 (137-204)||(1809170-1809237)
chr8 (15-72)||(1809049-1809106)
chr8 (15-72)||(4591290-4591346)


Alignment Details
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 1809170 - 1809237
Alignment:
Q  137 gttaaatatgtttttggtcattgtaaaattaaaaatttaatctttacttaattttaatatatctttta 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1809170 gttaaatatgtttttggtcattgtaaaattaaaaatttaatctttacttaattttaatatatctttta 1809237  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 1809049 - 1809106
Alignment:
Q  15 cagagacatcaaatataatccaattcctactaacaagatagaaacaaaacaaagttcc 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1809049 cagagacatcaaatataatccaattcctactaacaagatagaaacaaaacaaagttcc 1809106  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 72
Target Start/End: Original strand, 4591290 - 4591346
Alignment:
Q  15 cagagacatcaaatataatccaattcctactaacaagatagaaacaaaacaaagttcc 72  Q
    ||||||||||| ||||| |||||||||| || |||||| |||||||||||||||||||    
T  4591290 cagagacatcagatata-tccaattcctgctcacaagacagaaacaaaacaaagttcc 4591346  T

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