View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_4 (Length: 495)
Name: NF18457_low_4
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 28 - 489
Target Start/End: Original strand, 41735642 - 41736103
Alignment:
| Q |
28 |
aagatcacataccatgcgacaattatgttcctcgtgttactatgcccgcctttgtggtaagccaggtcatcatgcacctcagtgcaaacatcgcaagagg |
127 |
Q |
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| T |
41735642 |
aagatcacataccatgcgacaattatgttcctcgtgttactatggccgcctttgtggtaagccaggtcatcatgcacctcagtgcaaacatcgcaagagg |
41735741 |
T |
|
| Q |
128 |
aaagacaatcctcttaaagctaacttgactgaatgaggtgacactattggtgtggttaattataaattgtttggaatgggagatgggaggtgcatgatga |
227 |
Q |
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| T |
41735742 |
aaagacaatcctcttaaagctaacttgactgaatgaggtgacactattgatgtggttaattataaattgtttggaatgggagctgggaggtgcatgatga |
41735841 |
T |
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| Q |
228 |
tatggattaccacaaacataactaattttcttttgcaggtgagattaataacatgaggaacataattgttattactattgtgattaggcttgtgatcatg |
327 |
Q |
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| T |
41735842 |
tatggattaccacaaacataactaattttcttttgcaggtgagattaataacatgaggaacataattgttattactattgtgattaggcttgtgatcata |
41735941 |
T |
|
| Q |
328 |
actctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacagccttgctcttctttcagttggtaccttcgaaac |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41735942 |
actctttttgtgagaattattatgagtcttcagattttcttggtagctaaagccttcgccttgacagccttgctcttctttcagttggtaccttcgaaac |
41736041 |
T |
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| Q |
428 |
tcacgtggaaaataatatttttcatgtttgaattcttccaacagtttgtggtaattgatgat |
489 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
41736042 |
tcacgtggaaaataatatttttcatgtttgaattcttccaacagtttgtggtaattgttgat |
41736103 |
T |
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