View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_5 (Length: 436)
Name: NF18457_low_5
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 7 - 421
Target Start/End: Complemental strand, 14774412 - 14773998
Alignment:
| Q |
7 |
gacatcatcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagagatgcatttggtggtgttaag |
106 |
Q |
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| T |
14774412 |
gacatcttcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagagatgcatttggtggtgttaag |
14774313 |
T |
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| Q |
107 |
gctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggtagaatgaagaaccagaatg |
206 |
Q |
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| T |
14774312 |
gctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaaggtagaatgaagaaccagaatg |
14774213 |
T |
|
| Q |
207 |
agtcttctactgagatgatttatatgaataatcataatgtgtttgattgaaaaagtaatacatttgtatgaagttgatctcttagctagtttgattagga |
306 |
Q |
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| T |
14774212 |
agtcttctactgagatgatttatatgaataatcatcatgtgtttgattgaaaaagtaatacatttgtatgaagttgatctcttagctagtttgattagga |
14774113 |
T |
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| Q |
307 |
gtaggactcaaggtaacttgggttgtttaattacatgtgaaaattaattagtgatattcttattattaaatggacttgta----taacaattgttgaaat |
402 |
Q |
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| T |
14774112 |
gtaggactcaaggtaacttgggttgtttaattacatgtgaaa----attagttatattcttattattaaatggacttgtataactaacaattgttgaaat |
14774017 |
T |
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| Q |
403 |
agatggttgaattggatct |
421 |
Q |
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| T |
14774016 |
agatggttgaattggatct |
14773998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 7 - 186
Target Start/End: Complemental strand, 14782289 - 14782110
Alignment:
| Q |
7 |
gacatcatcattaactggtgggatttgtatgacagctttgttgtctatgaatgtgttgggaggtgttttggtgtttagagatgcatttggtggtgttaag |
106 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| | || | ||||||||||||||||||| | || |
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| T |
14782289 |
gacatcttcattaactggtgggatttgcatgacagctttgttgtctatgaatgtgttgggtggtgttatagtttatagagatgcatttggtggtttgaaa |
14782190 |
T |
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| Q |
107 |
gctgtttcaactgttttgtgcatgtggggattctgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
186 |
Q |
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| T |
14782189 |
gctgtttcaactgttttgtgtatgtggggattttgttcttatgtttatggtatgtatgttaagatgttggaagagaaagg |
14782110 |
T |
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