View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18457_low_8 (Length: 406)
Name: NF18457_low_8
Description: NF18457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18457_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Complemental strand, 44381522 - 44381142
Alignment:
| Q |
9 |
acatcatcagtcatcaacaaaatatactgcaaaatcctcaaaggagcattttcaaaatccaaatgaggcaacctcagttccctcactctacaagccccat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44381522 |
acatcatcagtcatcaacaaaatatactgcaaaatcttcaaaggagcattttcaaaatccaaatgaggcaacctcagttccctcactctacaagccccat |
44381423 |
T |
|
| Q |
109 |
caggtgctccaacccgacccactcgaacccggttcacatcaaccttcctgaaaaggtatacaacacctccaccacagtgatccacagaagggttttcctt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44381422 |
caggtgctccaacccgacccactcgaacccggttcacatcaaccttcctgaaaaggtatacaacacctccaccacagtgatccacagaagggttttcctt |
44381323 |
T |
|
| Q |
209 |
cgttttaaaaaaggtccaacctttcccagcaagaatcctgcaaaacccctccatcgtatcaacccgaattccggtaacccgagaacatagcgaaacagaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
44381322 |
cgttttaaaaaaggtccaacctttcccagcaagaatcctgcaaaacccctccatcgtatcaacccgaattccagtaacccgagaacatagcgaaacagaa |
44381223 |
T |
|
| Q |
309 |
caacaatcccagttactgacgccaacagcgtcagaatctccatcggaggtgaaaagaacaagcttgaaggcacgtgggaag |
389 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44381222 |
caacaatcccagttactgacgccaacagcgtcagaatctccatcggaggtgaaaagaacaagcttgaaggcgcgtgggaag |
44381142 |
T |
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