View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_high_1 (Length: 557)
Name: NF18458_high_1
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 9 - 539
Target Start/End: Complemental strand, 33252508 - 33251985
Alignment:
| Q |
9 |
agaagcatagggaggatgacagtagttgctcaaaggggatgatgtttttgcaaatactcttgcggtcaaattagtttgtgatcaaatgtgtggaatttta |
108 |
Q |
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| T |
33252508 |
agaagcatggggaggatgacaatagttgctcaaaggggatgatgtttctgcaaatactcttgcggtcaaattagtttgtgatcaaatgtgtggaatttta |
33252409 |
T |
|
| Q |
109 |
agggttaaaagtagtgcacctttaacttgcattaggttttcatgtggtttcgaggtgaaatatgtcgagtctgttgaattgtatcaagttttattaatgg |
208 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
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| T |
33252408 |
agggttaaaagtaatgcacctttaacttgcattaggttttcatgtggtttcgaggtgaaatatgttgagcctgttgaattgtatcaagttttattaat-- |
33252311 |
T |
|
| Q |
209 |
atcattgtccgattgtcattgattaacgccagcgagaccactgaactcgtttaagtgtgccggtgttacatcatcctaacatgttgagaagcgacccaat |
308 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252310 |
-----tgtccgattgtcattgattgacgccagcgagaccactaaactcgtttaagtgtgccggtgttacatcatcctaacatgttgagaagcgacccaat |
33252216 |
T |
|
| Q |
309 |
cttttagcttattgggcttagtccaaccaaataagcttattgggggtagcccaatcaagaacacaatttaagaagattttctattagacagatatttttg |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33252215 |
cttttagcttattgggcttagtccaaccaaataagcttattgggcttagcccaatcaagaacacaatttaagaagattttctattagacagatatttttg |
33252116 |
T |
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| Q |
409 |
gttctaatattccaaacaataatgtcctttctttttcaattctcatatcaattccaacgatctgaatatcaatttccccaaagttgccttgaaaaaagga |
508 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
33252115 |
gttctaatattccaaacaataatgtcctttctttttcaattctcatatcaattccaacgatctgaatttcaatttccccaaacttgccttgaaaaaagga |
33252016 |
T |
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| Q |
509 |
agtgggacagagtgaagattgacaaaacttc |
539 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
33252015 |
agtgggacagagtgaagattgacaaaacttc |
33251985 |
T |
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