View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_high_2 (Length: 390)
Name: NF18458_high_2
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 54632454 - 54632819
Alignment:
| Q |
18 |
aatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctg |
117 |
Q |
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| T |
54632454 |
aatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctg |
54632553 |
T |
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| Q |
118 |
tgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaat |
217 |
Q |
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| T |
54632554 |
tgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaat |
54632653 |
T |
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| Q |
218 |
ggccatagccagttttggccatcatttaccatttacttgatatgtggtcattgattcgacaaaatcactttaacctagaactatttaagacggggaccag |
317 |
Q |
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| T |
54632654 |
ggccatagccagttttggccatcatttaccatttacttgatatgtggtcattgattcgacaaaatcactttaacctagaactatttaagacggggaccag |
54632753 |
T |
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| Q |
318 |
ttttttccctagcaagagagaggtatatcatttattatctcctctgccattctgtttcctatgttt |
383 |
Q |
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| T |
54632754 |
ttttttccctagcaagagagaggtatatcatttattatctcctctgccattctgttttctatgttt |
54632819 |
T |
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Back To:
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Target: chr2 (Bit Score: 104; Significance: 9e-52; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 45313157 - 45312931
Alignment:
| Q |
18 |
aatgccatgcgtactcgtattaacaatcagggaagtttcataacttgaaggaaagaataccaggctgtggaatgtacaaatttcaatacgtgcatgtctg |
117 |
Q |
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| T |
45313157 |
aatgccatccatagtcatattaacaatcaggaaagtttcataacttgagggagagaagaccaggctgtggaatgtacatatttcaatacttgcatgtgtg |
45313058 |
T |
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| Q |
118 |
tgagtttttgtatgtttcaaatctttatatttatttgaaaatcagtgactttgggcaattctaattctgaattctgatgtcgtaccgagcatattgaaat |
217 |
Q |
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|| || ||||||||||| ||||| |||||||||||||||||||| | || |||||| |||||||||||||||| |||| ||||||||||||| |
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| T |
45313057 |
tg--------taggtttcaaatctatatatgtatttgaaaatcagtgactt-gagctattctagttctgaattctgatgttgtacttagcatattgaaat |
45312967 |
T |
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| Q |
218 |
ggccata--gccagttttggccatcatttaccattt |
251 |
Q |
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| T |
45312966 |
ggccatatttccagttttggccatcatttaccattt |
45312931 |
T |
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