View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_high_4 (Length: 357)
Name: NF18458_high_4
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 10 - 339
Target Start/End: Complemental strand, 41121884 - 41121555
Alignment:
| Q |
10 |
attattctatacaacaacaaaatggcataaccaacttcattgaactggtacatcagaagacaaaaatctttatagctttgaaggaagaatattaaatttt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121884 |
attattctatacaacaacaaaatggcataaccaacttcattgaactggtacatcagaagacaaaaatctttatagctttgaaggaagaatattaaatttt |
41121785 |
T |
|
| Q |
110 |
agaaatcaagttcacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacatgtcagcaatcaagtttggaaatgctactacattaaacaagt |
209 |
Q |
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| T |
41121784 |
ggaaatcaagttcacatgtcagcaatgttgcaaagcaaagagagaatctaaattcacatgtcagcaatcaagtttggaaatgctactacattaaacaagt |
41121685 |
T |
|
| Q |
210 |
gcacataatagacatgtactagtactatgaacaacaaatatcaaagtgttaacacttaacagatcttaacatatcagcaatgataaatattggtttactt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41121684 |
gcacataatagacatgtactagtactatgaacaacaaatatcaaagtgttcacacttaacagatcttaacatatcagcaatgataaatattggtttactt |
41121585 |
T |
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| Q |
310 |
gtaattcatcttaacagatcaagtttgtgt |
339 |
Q |
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| T |
41121584 |
gtaattcatcttaacagatcaagtttgtgt |
41121555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 177 - 215
Target Start/End: Original strand, 54039728 - 54039766
Alignment:
| Q |
177 |
tcaagtttggaaatgctactacattaaacaagtgcacat |
215 |
Q |
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| T |
54039728 |
tcaagtttggaaatgctactacaagaaacaagtgcacat |
54039766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 36258941 - 36258971
Alignment:
| Q |
248 |
tatcaaagtgttaacacttaacagatcttaa |
278 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
36258941 |
tatcaaagtgttaacacttaacagatcttaa |
36258971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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