View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18458_high_6 (Length: 284)
Name: NF18458_high_6
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 39571210 - 39571476
Alignment:
| Q |
1 |
acagagaagtaaactctaatcatatagaatcaatccattataattgtcaaaaattcaattcattataatgatatgctaattagttgatatcagggcatat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
39571210 |
acagagaagtaaactctaatcatatagaatcaatccattataattgtcaaaaattcaattcattataatgatatgctaattagttgatatcggggcatat |
39571309 |
T |
|
| Q |
101 |
atacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571310 |
atacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcaccgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcat |
39571409 |
T |
|
| Q |
201 |
gaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctcaac |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39571410 |
gaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctcaac |
39571476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 39582089 - 39581816
Alignment:
| Q |
1 |
acagagaagtaaactctaatcatatagaatcaatccattataatt--gtcaaaaat---tcaattcattataatgatatgctaatta----gttgatatc |
91 |
Q |
| |
|
||||||||| || ||||||||| |||||||| ||||||||||||| |||||||| | ||| || | |||||||| |||||||| |||||| | |
|
|
| T |
39582089 |
acagagaagaaagctctaatcaaatagaatcgatccattataattttgtcaaaaaaatataaatccactgtaatgataagctaattaattagttgatgtt |
39581990 |
T |
|
| Q |
92 |
agggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagctt |
191 |
Q |
| |
|
|| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| || | ||||||||| |
|
|
| T |
39581989 |
agtgcatatatacatcacataattttgcatcaaaatcaaaaagcctccaaagctgcaccaagcgcaaatatatcacaatcttctgcgcagcaccaagcac |
39581890 |
T |
|
| Q |
192 |
gatgatcatgaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctca |
265 |
Q |
| |
|
|||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39581889 |
gatggtcatggccgtttttgcatccacactcattccaattattcaatctcctcttattttgcgtctccatctca |
39581816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 95 - 264
Target Start/End: Complemental strand, 39575425 - 39575256
Alignment:
| Q |
95 |
gcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgat |
194 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||||||||||| ||| |
|
|
| T |
39575425 |
gcatatatacatcacatatttttgcatcaaaatcaaaaagcctccaaagctccacctaatgcaaatatatcacaatcttcagtgttgcaccaagctcgat |
39575326 |
T |
|
| Q |
195 |
gatcatgaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctc |
264 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39575325 |
gatcatgaccatttttacatccacacttgttccaattattcaatctcctcttattttgcttctccatctc |
39575256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 66 - 265
Target Start/End: Complemental strand, 39585654 - 39585455
Alignment:
| Q |
66 |
taatgatatgctaattagttgatatcagggcatatatacattgcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatc |
165 |
Q |
| |
|
|||| ||| |||||||||||||| | || |||||||||||| ||||| |||||||| |||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
39585654 |
taattataagctaattagttgatgttagtgcatatatacatcacataattttgcatccaaatcaaaaagcctccaaagctccacctaatgcaaatatatc |
39585555 |
T |
|
| Q |
166 |
acattcttcagcactgcaccaagcttgatgatcatgaccatttttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctca |
265 |
Q |
| |
|
||| ||||||| ||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
39585554 |
acaatcttcagtgttgcaccatgcttgatgattatgaccatttttgcatccacactcattccagttattcaatctccatttatttttgttctccatctca |
39585455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 11 - 265
Target Start/End: Original strand, 39565742 - 39565996
Alignment:
| Q |
11 |
aaactctaatcatatagaatcaatccattataatt--gtcaaaaat-tcaattcattataatgatatgctaattagttgatatcagggcatatatacatt |
107 |
Q |
| |
|
||||||||| || |||||| |||||| ||||||| |||||||| ||||| |||||||||||| |||||||||||||| | || || ||||||| | |
|
|
| T |
39565742 |
aaactctaacaatttagaattaatccactataattttgtcaaaaaaatcaatctattataatgataagctaattagttgatgttagtgcctatatacgta |
39565841 |
T |
|
| Q |
108 |
gcataactttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatt |
207 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| || || |||||||||||||| ||||| || | ||||||||| |||| ||||| || || |
|
|
| T |
39565842 |
gcataatcttgcatcaaaactaaaaagcctccaaagcgcca---aacgcaaatatatcacactcttctgcgcagcaccaagcacgatggtcatggccgtt |
39565938 |
T |
|
| Q |
208 |
tttgcatccacactcattccaattattcaatctcctcttattttgcttctccatctca |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39565939 |
tttgcatccacactcattccaattattcaatctcctgttattttgcttctccatctca |
39565996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 39568508 - 39568657
Alignment:
| Q |
116 |
ttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatttttgcatc |
215 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| | ||||||| |||||| ||||| || ||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
39568508 |
ttgcatcaaaattaaaaagcctctaaagctgcaccaagcgcaaataaatcacaatcttcggcgctgcaccaagcattatgatcatgaccatttttgcatc |
39568607 |
T |
|
| Q |
216 |
cacactcattccaattattcaatctcctcttattttgcttctccatctca |
265 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||| ||||||||| |
|
|
| T |
39568608 |
cacactcattccaattattcaaccttctcttattcttcttttccatctca |
39568657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 116 - 265
Target Start/End: Original strand, 39561138 - 39561287
Alignment:
| Q |
116 |
ttgcatcaaaatcaaaaagcctccaaagctgcactgaatgcaaatatatcacattcttcagcactgcaccaagcttgatgatcatgaccatttttgcatc |
215 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| | | | ||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||||| |
|
|
| T |
39561138 |
ttgcattaaaatcaaaaagcctccaaagctgcgccaagcacgaatatatcacaatcttcagcgctgcaccaagcgtgatgatcatggccattcttgcatc |
39561237 |
T |
|
| Q |
216 |
cacactcattccaattattcaatctcctcttattttgcttctccatctca |
265 |
Q |
| |
|
|||||||||||||||||||||| || |||||||| | ||| ||||||||| |
|
|
| T |
39561238 |
cacactcattccaattattcaaccttctcttattcttcttttccatctca |
39561287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University