View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_low_3 (Length: 387)
Name: NF18458_low_3
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 514789 - 514633
Alignment:
| Q |
1 |
atagcttatgaaaacagcttataggttgtacataacataagaattagcaaagagtagatataaccttgagaggcttccttctgtagagtagaatagttcc |
100 |
Q |
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| T |
514789 |
atagcttatgaaaacagcttataggttgtacataa-----gaattagcaaagagtaaatataaccttgagaggtttccttctgtagagtagaatagttcc |
514695 |
T |
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| Q |
101 |
atagataatcatcaaaaatagataatttagaaatgattgtgatgttggagcattaattccta |
162 |
Q |
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|||||||||||||||||||| |||||||||||| || ||||| ||||||||||||||||||| |
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| T |
514694 |
atagataatcatcaaaaatacataatttagaaacgactgtgacgttggagcattaattccta |
514633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 244 - 365
Target Start/End: Complemental strand, 514510 - 514389
Alignment:
| Q |
244 |
accttttttagctaaatcagaagaagcgaaaccagtagcagtaatgagaagagaaagaaattgacctaaaacaagaccaattaatgtgttcttagtccaa |
343 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
514510 |
accttttttagctaaatcagaagaagcgaaaccagtagcagtgatgagaagagaaagaaattgacctaaagcaagaccaattaatgtgttcttagtccaa |
514411 |
T |
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| Q |
344 |
tatttcttaatatcgatcatca |
365 |
Q |
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||||||||||||||||| |||| |
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| T |
514410 |
tatttcttaatatcgataatca |
514389 |
T |
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