View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_low_4 (Length: 371)
Name: NF18458_low_4
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 358
Target Start/End: Original strand, 34686498 - 34686834
Alignment:
| Q |
19 |
gttttaaagttcaatgcaacatttagtatgtatgaaacaacattttataaataccaaaacaagcaatatatttgttttatggagtatagtatagtattta |
118 |
Q |
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| T |
34686498 |
gttttaaagttcaatgcaacatt-agtatgtatgaaacaacatttcataaataccaaaacaaccaatatatttgttttatggagtatagtatagtattta |
34686596 |
T |
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| Q |
119 |
acttattatatatgcattcagagaccaaaatgactatcac--atagtatagtatatatctaacttaccctatgcgcattccagcatgaccagtggttttg |
216 |
Q |
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| T |
34686597 |
acttattatatatgcattcagagaccaaaatgaccatcactcatagtata----atatctaacttaccctatgcgcattccagcatgaccagtgcttttg |
34686692 |
T |
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| Q |
217 |
gagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttc |
316 |
Q |
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| T |
34686693 |
gagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggccagtagtaggcaagatcatgaaccagaagtccttgacttc |
34686792 |
T |
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| Q |
317 |
tattgaccttagacttcctcacatgtccatcaggattatttg |
358 |
Q |
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| T |
34686793 |
tattgaccttagacttcctcacatgtccatcaggattatttg |
34686834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 296
Target Start/End: Original strand, 43612595 - 43612712
Alignment:
| Q |
179 |
cttaccctatgcgcattccagcatgaccagtggttttggagacagtaaaaagggttagatcatgatcagaaggcgatgatataggagtgtattgcggcca |
278 |
Q |
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| T |
43612595 |
cttaccctatgcgcgttccagcgtgaccggtgctttttgagacagtgaaaagagtaagatcataatctgaagcaaatagtattggagtgtattgtggcca |
43612694 |
T |
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| Q |
279 |
gtagtaggcaagatcatg |
296 |
Q |
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| T |
43612695 |
ataataggcaaggtcatg |
43612712 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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