View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_low_6 (Length: 329)
Name: NF18458_low_6
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 46010035 - 46009744
Alignment:
| Q |
1 |
acattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattatttaatgtttgttt |
100 |
Q |
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| T |
46010035 |
acattaaaaatggaaaacgacatttgttttaaaatatttatttaactcgcaacaaaattaatattcatttttaagcatatgaattattta---------- |
46009946 |
T |
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| Q |
101 |
gacttaattaatctaacgcacagtaaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgannnnnnnacaaagacca |
200 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
46009945 |
-----------tctaacgcacaataaaagttttagtcttataaaagtgaaaaataaataaatcactgcagggaaaactaacgatttttttacaaagacca |
46009857 |
T |
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| Q |
201 |
atgtctttgacaccaaaccaaactaagcatatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctca |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46009856 |
atgtctttgacaccaaaccaaactaagcacatggcttaaataatgacacatgtttaattgtatgcacaaacgatttattgattaacatcacaatttctca |
46009757 |
T |
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