View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18458_low_7 (Length: 311)
Name: NF18458_low_7
Description: NF18458
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18458_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 300
Target Start/End: Complemental strand, 3802991 - 3802708
Alignment:
| Q |
17 |
tgttggtgcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatg |
116 |
Q |
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| T |
3802991 |
tgttggggcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatg |
3802892 |
T |
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| Q |
117 |
gcttcaatttctcttggaaactatgttagcagcatgatggtgaaatccgtgatgaaaatcactgctaaaggcgaagaaccgggatggataccgaataact |
216 |
Q |
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| T |
3802891 |
gcttcaatttctcttggaaactatgttagcagcatgatggtgaaatccgtgatgaaaatcactactaaaggcgaagaactgggatggataccgaataact |
3802792 |
T |
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| Q |
217 |
tgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgttttctgtgctc |
300 |
Q |
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| T |
3802791 |
tgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgtgttctgtgctc |
3802708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 300
Target Start/End: Original strand, 397793 - 398076
Alignment:
| Q |
17 |
tgttggtgcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatg |
116 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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| T |
397793 |
tgttggtgcttcagaagtttttatgtatgtgggtcagttggagttcttcaatggtcaagcacctgatggcataaaaagctttggaagttcactttgtatg |
397892 |
T |
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| Q |
117 |
gcttcaatttctcttggaaactatgttagcagcatgatggtgaaatccgtgatgaaaatcactgctaaaggcgaagaaccgggatggataccgaataact |
216 |
Q |
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| T |
397893 |
gcatcaatttctcttggaaactatgttagcagcatgatggtgaaattggtgatgatattcactgctagaggcgaggaacctggatggattccgaataact |
397992 |
T |
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| Q |
217 |
tgaatgatgggcacatggattggtttttctacctcatcgcagcgttaagtgctcttaaccttgtcgtctacgttttctgtgctc |
300 |
Q |
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| T |
397993 |
taaatgttgggcacatggacaggtttttctacctcattgcagcgctaagtgcccttgaccttgtcatctatgtgttctgtgctc |
398076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 27 - 145
Target Start/End: Original strand, 2745785 - 2745903
Alignment:
| Q |
27 |
tcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatggcttcaattt |
126 |
Q |
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| T |
2745785 |
tcagaagttttcatgtatgttggtcaattggagtttttcaattcacaggcacctgatggattgaaaagctttggaagtgcactttgtatgacttcaatat |
2745884 |
T |
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| Q |
127 |
ctcttggaaactatgttag |
145 |
Q |
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| T |
2745885 |
cattaggaaactatgttag |
2745903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 52809630 - 52809497
Alignment:
| Q |
19 |
ttggtgcttcagaagtttttgtgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatggc |
118 |
Q |
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||||||||||||| ||||| ||||||||||||| ||||||||||| ||||||||||| || ||||| |||||||| ||||| ||||||||||||||||| |
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| T |
52809630 |
ttggtgcttcagaggttttcatgtatgtgggtcaattggagttctttaatggtcaagcaccagatggaataaaaagttttgggagttcactttgtatggc |
52809531 |
T |
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| Q |
119 |
ttcaatttctcttggaaactatgttagcagcatg |
152 |
Q |
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| T |
52809530 |
ttcaatttctcttggaaactatgtgagtagcatg |
52809497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 142
Target Start/End: Complemental strand, 4708421 - 4708319
Alignment:
| Q |
40 |
tgtatgtgggtcagttggagttcttcaatggtcaagccccggatggcataaaaagctttggaagttcactttgtatggcttcaatttctcttggaaacta |
139 |
Q |
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||||||| || ||||| ||||||||||||| |||| | || |||||| |||| || || |||||| ||||||| ||| | || ||||| ||||| ||||| |
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| T |
4708421 |
tgtatgtagggcagttagagttcttcaatgctcaaacacctgatggcttaaagagtttcggaagtgcactttgcatgacatccatttcccttggcaacta |
4708322 |
T |
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| Q |
140 |
tgt |
142 |
Q |
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||| |
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| T |
4708321 |
tgt |
4708319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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