View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_high_10 (Length: 280)
Name: NF18459_high_10
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 55931502 - 55931762
Alignment:
| Q |
20 |
aaagcccaatattggcagaaccaatcaatacagaacttatcgaaccaataactgagttcaaaggtagacctcaatacatacagaaccaacaaaaccatga |
119 |
Q |
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| T |
55931502 |
aaagcctaatgttggcagaaccaatcaatacagaacttatcgaaccaataactgagttcaaaggtagacctcaatacatatagaaccaacaaaaccatga |
55931601 |
T |
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| Q |
120 |
ttagatgaaccaaataaagaacaatcaaatttggaatattgatgaccctgtaacttgaaaggcttcttgaaacacttcaaattaggaaagaagtcatatg |
219 |
Q |
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| T |
55931602 |
ttagatgaaccaaataaagaacaatcaaatttggaatattgatgaccctgtaacttgaaaggcttcttgaaacacttcaaattaggaaagaagtcatatg |
55931701 |
T |
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| Q |
220 |
aaaagatgaaataatgaacaaagaaaatcgattaccataataagaatcttattagtgatga |
280 |
Q |
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| T |
55931702 |
aaaagatgaaataatgaacaaagaaaatcgattaccataataagaatcttattagtgatga |
55931762 |
T |
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