View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_high_15 (Length: 252)
Name: NF18459_high_15
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 2391514 - 2391291
Alignment:
| Q |
11 |
cacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggccacaatgcggtaaactgggttggagtaaggagg |
110 |
Q |
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| T |
2391514 |
cacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggccacaatgcggtaaactgggtaggagtaaggagg |
2391415 |
T |
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| Q |
111 |
gtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaatttggattttgattgagacgataactccacaagaccaggtgcaagacgct |
210 |
Q |
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| T |
2391414 |
gtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaatttggattttgattgagaggataactccacaagaccaggtgcaagacgct |
2391315 |
T |
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| Q |
211 |
taagcttcaacctgttattagaag |
234 |
Q |
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|||||||||||||||||||||||| |
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| T |
2391314 |
taagcttcaacctgttattagaag |
2391291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 56189742 - 56189968
Alignment:
| Q |
8 |
cagcacagaagataacaatctctcaaaacccaacaagtttgcatttgatccattaagagaggcaagaggccacaatgcggtaaactgggttggagtaagg |
107 |
Q |
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||||||||||||||||| | | ||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
56189742 |
cagcacagaagataacagtttttcaaaacccaacaagtttgtatttgatccattaagggaggcaagaggccacaatgcagtaaactgggttggagtaagg |
56189841 |
T |
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| Q |
108 |
agggtcggggcttcctcctggagatcaacggtagacagggaagtgtcaactaa------tttggattttgattgagacgataactccacaagaccaggtg |
201 |
Q |
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| T |
56189842 |
agagtcggggcttcctcctggagatcaacggtagacagggaagtctcgcttgatttggctttgggttttgattgagacgataactccacaagagcaggtg |
56189941 |
T |
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| Q |
202 |
caagacgcttaagcttcaacctgttat |
228 |
Q |
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| T |
56189942 |
caagccgcttgagcttcaacctgttat |
56189968 |
T |
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