View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18459_high_19 (Length: 202)
Name: NF18459_high_19
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_high_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 19 - 190
Target Start/End: Original strand, 34255363 - 34255534
Alignment:
| Q |
19 |
gtatactaattaaactaatttttcttatggatatataaaatgtatgaatcatcatgcacctctttttccaattctatttggcagatatgatgtccgaaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34255363 |
gtatactaattaaactaatttttcttatggatatataaaatgtatgaatcatcatgcacctctttttccaattctatttggcagatatgatgtccgaaaa |
34255462 |
T |
|
| Q |
119 |
acatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattcttcg |
190 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34255463 |
acatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtatattgttcg |
34255534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 84 - 185
Target Start/End: Original strand, 41551644 - 41551745
Alignment:
| Q |
84 |
ttccaattctatttggcagatatgatgtccgaaaaacatcccttgacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtata |
183 |
Q |
| |
|
||||||||||||||||||| | |||||||| ||||||| || ||||||||||| ||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
41551644 |
ttccaattctatttggcagtttcaatgtccgagaaacatctctagacttgtacctcttttacttggaggtcacaagaagaggaggttatcaccaggtata |
41551743 |
T |
|
| Q |
184 |
tt |
185 |
Q |
| |
|
|| |
|
|
| T |
41551744 |
tt |
41551745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 128 - 182
Target Start/End: Original strand, 37556731 - 37556785
Alignment:
| Q |
128 |
gacttgtacctgttttacttggaggtcacgaaaagaggaggttatcaccaggtat |
182 |
Q |
| |
|
||||||||||| ||||||||||| ||||| | ||||||||||| ||||||||||| |
|
|
| T |
37556731 |
gacttgtacctcttttacttggaagtcaccagaagaggaggttttcaccaggtat |
37556785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University