View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_low_1 (Length: 510)
Name: NF18459_low_1
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 243 - 494
Target Start/End: Complemental strand, 1034206 - 1033947
Alignment:
| Q |
243 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatc |
342 |
Q |
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| T |
1034206 |
ttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatc |
1034107 |
T |
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| Q |
343 |
catcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaatcttacttggtgattccg----agtcctaaaccagtcaaat-----a |
433 |
Q |
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| T |
1034106 |
catcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaatcttacttaatgattccggccgagtcccaaaccagtcaaattaaata |
1034007 |
T |
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| Q |
434 |
tgccagaacaagattctgaacagacaggcacaaaatttcttctggtatatgatcaataata |
494 |
Q |
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| T |
1034006 |
tgccata-caagattctgaacagacaggcacaaaatttcttctggtatatgatcaataata |
1033947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 230 - 461
Target Start/End: Complemental strand, 4515883 - 4515652
Alignment:
| Q |
230 |
ttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtattttcacaaggaaactaaagaaaatgtaactgaaa |
329 |
Q |
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| T |
4515883 |
ttatatggtcattttaaatattggctgagttgtcccagtcaacaagacattaggtttgaactttattttcaccgggaaactaaagaaaatgtaactgaaa |
4515784 |
T |
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| Q |
330 |
acatataaatatccatcttccatgttgtaaacgaattcaaagatgcatctg-ttgagtaaatgcaaatcttacttggtgattccgagtcctaaaccagtc |
428 |
Q |
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| T |
4515783 |
acatataaatatccatcttccatgttgtaaacgaattc-aagatgcatctgtttgagtaaatgcaaatcttacctagtgattccgaatcccaaaccagtc |
4515685 |
T |
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| Q |
429 |
aaatatgccagaacaagattctgaacagacagg |
461 |
Q |
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| T |
4515684 |
aaatatgccagaacaagattctgaacagacagg |
4515652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 197 - 494
Target Start/End: Original strand, 50831828 - 50832125
Alignment:
| Q |
197 |
ttgtaaataacgggataaccagacaaaaatgtcttatatggtcattttaaatattggctgagttgtaccggtcaacaagatattaggtttgaactgtatt |
296 |
Q |
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| T |
50831828 |
ttgtacataatgggacaaccagacaaaaatgtcttgtatagttattttaaatcttggctgagttgtaccagtcaacaagatattaggtatgaactgtatt |
50831927 |
T |
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| Q |
297 |
ttcacaaggaaactaaagaaaatgtaactgaaaacatataaatatccatcttccatgttgtaaacgaattcaaagatgcatctgttgagtaaatgcaaat |
396 |
Q |
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| T |
50831928 |
ttcaccaggaaacttgagaaaatgtaactgaaaatatataaatgtccatttttcatgttgcaaacgaattcaaagatgcatatgttgactaaatgcaaat |
50832027 |
T |
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| Q |
397 |
cttacttggtgattccgagtcctaaaccagtcaaatatgccagaacaagattctgaacagacaggcacaaaatttcttctggtatatgatcaataata |
494 |
Q |
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| T |
50832028 |
ctcacctactgattccggagcccaaaccagtcgaatatgccagaacaagattctgaatagacaggtacaaaatttcttccggtgtatggtcaataata |
50832125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 56 - 108
Target Start/End: Original strand, 50831176 - 50831228
Alignment:
| Q |
56 |
ttggatcaactgatgcggcagtagtttgatattcataaagcccactgagcttc |
108 |
Q |
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| T |
50831176 |
ttggatcaactgatgcggcagtagtttgagattcagaaagcctaccgagcttc |
50831228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Original strand, 50831502 - 50831554
Alignment:
| Q |
106 |
ttctgacacaactctctgagacctgagtagaactggcgttagagtcaatggta |
158 |
Q |
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| T |
50831502 |
ttctgacacaactctctgaggcctgaatagaactggtgttggagttaatggta |
50831554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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