View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_low_11 (Length: 280)
Name: NF18459_low_11
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 6400712 - 6400440
Alignment:
| Q |
2 |
tactgatatgccttgcctttgttttgtgcactttat----gcaagtccaattgagtctgttatgtcccttttacttttgacagataacgggcttttgttt |
97 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6400712 |
tactgatatgccttgccagtgttttgtgcactttatatatgcaagtccaattgagcctgttatgtcccttttacttttgacagataacgggcttttgttt |
6400613 |
T |
|
| Q |
98 |
ctttgaatagctcgatatttcattatattgtatggagcaggttcaaactataatttagttcatttagtgtttgaccatgattgtgagggattaagggatg |
197 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6400612 |
ctttgaatagctcgatattacattatattgtatggagcaggttcaaactataatttagttcatttagtgtttgaccatgattgtgagggattaagggatg |
6400513 |
T |
|
| Q |
198 |
gtgaggtctacgatgttcaaacctttggcaatactgcagatgatccgtttgcatataaaacttatttcctatg |
270 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
6400512 |
gtgaggtctacggtgttcaaacctttggcaatactgcagatgatccgtgtgcatataaaacttatttcctatg |
6400440 |
T |
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