View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_14 (Length: 254)

Name: NF18459_low_14
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_14
NF18459_low_14
[»] chr4 (23 HSPs)
chr4 (1-240)||(51331440-51331679)
chr4 (3-70)||(50398699-50398766)
chr4 (4-79)||(12692161-12692236)
chr4 (4-70)||(1645911-1645977)
chr4 (3-70)||(4127599-4127666)
chr4 (3-70)||(4128051-4128118)
chr4 (3-70)||(14351707-14351774)
chr4 (5-70)||(24629596-24629660)
chr4 (4-70)||(3169118-3169184)
chr4 (4-70)||(27026416-27026482)
chr4 (11-72)||(13614066-13614126)
chr4 (21-70)||(29628846-29628895)
chr4 (18-70)||(10165875-10165927)
chr4 (10-70)||(23942954-23943014)
chr4 (4-72)||(24629142-24629210)
chr4 (3-61)||(21067203-21067261)
chr4 (3-61)||(31817559-31817617)
chr4 (6-55)||(26200452-26200501)
chr4 (3-44)||(53996276-53996317)
chr4 (3-47)||(21067672-21067716)
chr4 (6-70)||(27029190-27029254)
chr4 (9-61)||(33987238-33987290)
chr4 (6-46)||(50399157-50399197)
[»] chr6 (16 HSPs)
chr6 (3-70)||(6331079-6331146)
chr6 (4-77)||(20126350-20126423)
chr6 (3-70)||(20896855-20896922)
chr6 (3-70)||(3652891-3652958)
chr6 (4-70)||(2681384-2681450)
chr6 (4-70)||(20850233-20850299)
chr6 (3-72)||(3652396-3652465)
chr6 (3-62)||(23986484-23986543)
chr6 (4-70)||(2891005-2891071)
chr6 (9-72)||(15929109-15929172)
chr6 (9-70)||(2720737-2720798)
chr6 (3-70)||(11062198-11062265)
chr6 (3-70)||(21311883-21311950)
chr6 (3-70)||(33775171-33775238)
chr6 (6-72)||(17851284-17851350)
chr6 (6-70)||(23776353-23776417)
[»] chr5 (15 HSPs)
chr5 (3-70)||(15513180-15513247)
chr5 (3-70)||(2193728-2193795)
chr5 (4-70)||(34371524-34371590)
chr5 (4-70)||(34371980-34372046)
chr5 (4-70)||(39146851-39146917)
chr5 (3-70)||(20039641-20039708)
chr5 (3-70)||(17445622-17445689)
chr5 (3-70)||(18304343-18304410)
chr5 (4-70)||(34867702-34867768)
chr5 (5-70)||(5067059-5067124)
chr5 (21-70)||(42788830-42788879)
chr5 (4-70)||(21886314-21886380)
chr5 (12-61)||(16370884-16370933)
chr5 (4-70)||(4102725-4102791)
chr5 (3-47)||(27647002-27647046)
[»] chr2 (15 HSPs)
chr2 (3-70)||(29804594-29804661)
chr2 (3-70)||(8256438-8256505)
chr2 (3-70)||(27883093-27883160)
chr2 (3-70)||(33174870-33174937)
chr2 (4-70)||(33770922-33770988)
chr2 (4-70)||(25338165-25338231)
chr2 (4-70)||(41754201-41754267)
chr2 (3-69)||(1706955-1707021)
chr2 (4-70)||(25434224-25434290)
chr2 (3-70)||(15619810-15619877)
chr2 (3-70)||(15639652-15639719)
chr2 (3-68)||(18448085-18448150)
chr2 (3-70)||(16379304-16379372)
chr2 (3-70)||(18098728-18098796)
chr2 (3-70)||(18099045-18099113)
[»] chr1 (19 HSPs)
chr1 (3-70)||(43057231-43057298)
chr1 (4-70)||(20845829-20845895)
chr1 (3-70)||(16452100-16452167)
chr1 (3-70)||(16461253-16461320)
chr1 (4-70)||(20054248-20054314)
chr1 (4-70)||(20054704-20054770)
chr1 (4-70)||(20055160-20055226)
chr1 (4-70)||(20055616-20055682)
chr1 (4-70)||(20056072-20056138)
chr1 (4-70)||(20056528-20056594)
chr1 (4-70)||(20056975-20057041)
chr1 (4-70)||(20057431-20057497)
chr1 (6-70)||(38340818-38340882)
chr1 (4-70)||(20057887-20057953)
chr1 (6-67)||(10820507-10820568)
chr1 (3-70)||(43057690-43057757)
chr1 (3-66)||(52250122-52250185)
chr1 (5-68)||(12883438-12883501)
chr1 (3-70)||(51373041-51373108)
[»] chr8 (16 HSPs)
chr8 (3-70)||(28453251-28453318)
chr8 (3-66)||(27022505-27022568)
chr8 (4-70)||(10844795-10844861)
chr8 (4-70)||(12827422-12827488)
chr8 (4-70)||(22026291-22026357)
chr8 (4-70)||(22549163-22549229)
chr8 (4-70)||(27925811-27925877)
chr8 (3-70)||(32292309-32292376)
chr8 (5-70)||(8080511-8080576)
chr8 (3-70)||(6465077-6465144)
chr8 (3-70)||(22840696-22840763)
chr8 (4-70)||(6466623-6466689)
chr8 (4-70)||(22548717-22548783)
chr8 (3-64)||(27022050-27022111)
chr8 (3-70)||(33852425-33852491)
chr8 (3-70)||(41659272-41659338)
[»] chr3 (18 HSPs)
chr3 (3-70)||(16811293-16811360)
chr3 (4-70)||(39653076-39653142)
chr3 (4-70)||(39653532-39653598)
chr3 (3-74)||(50347654-50347725)
chr3 (3-67)||(16810840-16810904)
chr3 (6-70)||(25803174-25803238)
chr3 (6-70)||(28561658-28561722)
chr3 (3-70)||(11180200-11180267)
chr3 (8-70)||(2911007-2911069)
chr3 (5-70)||(13150268-13150332)
chr3 (25-70)||(25238860-25238905)
chr3 (4-61)||(29224245-29224302)
chr3 (6-70)||(14813861-14813925)
chr3 (4-70)||(970878-970944)
chr3 (8-70)||(13155374-13155435)
chr3 (23-69)||(14814318-14814364)
chr3 (11-48)||(43737052-43737089)
chr3 (3-59)||(32227388-32227444)
[»] chr7 (17 HSPs)
chr7 (3-70)||(2611819-2611886)
chr7 (3-70)||(6747765-6747832)
chr7 (3-70)||(34405758-34405825)
chr7 (3-70)||(36422164-36422231)
chr7 (4-70)||(2463554-2463620)
chr7 (4-70)||(10430675-10430741)
chr7 (4-70)||(2189056-2189122)
chr7 (3-70)||(679729-679796)
chr7 (3-70)||(16812005-16812072)
chr7 (4-70)||(43233325-43233391)
chr7 (25-70)||(2189512-2189557)
chr7 (11-72)||(9623119-9623179)
chr7 (3-70)||(26957724-26957791)
chr7 (3-64)||(35527288-35527348)
chr7 (3-47)||(6719230-6719274)
chr7 (22-70)||(16812146-16812194)
chr7 (3-47)||(29039178-29039222)
[»] scaffold0243 (1 HSPs)
scaffold0243 (4-70)||(1132-1198)
[»] scaffold0088 (1 HSPs)
scaffold0088 (4-70)||(23585-23651)
[»] scaffold0168 (1 HSPs)
scaffold0168 (3-70)||(2654-2721)
[»] scaffold0333 (2 HSPs)
scaffold0333 (4-70)||(4473-4539)
scaffold0333 (4-70)||(4928-4994)
[»] scaffold0391 (1 HSPs)
scaffold0391 (4-61)||(14663-14720)
[»] scaffold0047 (2 HSPs)
scaffold0047 (3-70)||(17846-17914)
scaffold0047 (3-47)||(17765-17809)
[»] scaffold0002 (2 HSPs)
scaffold0002 (5-70)||(154670-154734)
scaffold0002 (8-70)||(151553-151614)


Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51331440 - 51331679
Alignment:
Q  1 tagggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttatagtaagagcctaaaatggattaattaatc 100  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  51331440 tagggaaccgctcattatcatgccttgtgcaccgacaaccactccccgccctcatcagccttgggtgttatagtaagagcctaaaatggattaattaatc 51331539  T
Q  101 cgtagatccaacgtgtggggtggggttgtaagtatcaaatatggaataaagnnnnnnnnggaatgcagagacaaagaaacacgatttaaagtcacagtcc 200  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||    
T  51331540 agtagatccaacgtgtgggatggggttgtaagtatcaaatatggaataaagaaaaaaaaggaatgcagagacaaagaaacacgatttaaagtcacagtcc 51331639  T
Q  201 tctttgaaatttgcagactagacaattttccttctctctg 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51331640 tctttgaaatttgcagactagacaattttccttctctctg 51331679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 50398699 - 50398766
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  50398699 gggagccgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 50398766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 4 - 79
Target Start/End: Original strand, 12692161 - 12692236
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttatagtaagag 79  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  ||||||||||||||||||||| || |||||    
T  12692161 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgttacagaaagag 12692236  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 1645911 - 1645977
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  1645911 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 1645977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 4127599 - 4127666
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  ||||||||| |||||||||||    
T  4127599 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgtta 4127666  T

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Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 4128051 - 4128118
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  4128051 gggagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgtta 4128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 14351774 - 14351707
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||||||||||||| | |||  ||||||||||||||||    
T  14351774 gggagccgctcattgtcgtgccttgtgcaccggcaaccactccctagccttatcagccttgggtgtta 14351707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 24629596 - 24629660
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| || ||||||||| |||||| ||||||||||| |||||| ||||||||||||||    
T  24629596 gagccgctcattgtcgtgccttgtgaaccggcgaccactcccca-cctcgttagccttgggtgtta 24629660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 3169184 - 3169118
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||| |||||||| || || ||||||||||||  |||||||||| ||||||||| ||||||||||||    
T  3169184 ggagtcgctcattgtcgtgtcttgtgcaccggtgaccactccccgtcctcgtcaaccttgggtgtta 3169118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 27026482 - 27026416
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||| |||||||| ||||||||||||||||| | |||||||||| | ||||||||||| ||| ||||    
T  27026482 ggagtcgctcattgtcatgccttgtgcaccgacgaccactccccgttctcgtcagcctcgggcgtta 27026416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Original strand, 13614066 - 13614126
Alignment:
Q  11 ctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    |||||||||||| ||||||||||||||| |||||||  ||||| |||| |||||||||||||    
T  13614066 ctcattatcatgtcttgtgcaccggcaatcactcccagtcctcatcag-cttgggtgttata 13614126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 29628846 - 29628895
Alignment:
Q  21 tgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||||| |||||||||| |||||||| ||||||| |||||    
T  29628846 tgccttgtgcaccggcgaccactccccgtcctcgtccgccttggatgtta 29628895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 10165927 - 10165875
Alignment:
Q  18 tcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| | || ||||||||||| |||||||||||||| ||||||    
T  10165927 tcatgccttgtgcatccgcgaccactccccaccctcgtcagccttgagtgtta 10165875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 23942954 - 23943014
Alignment:
Q  10 gctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| || |||||||||||||||| ||||||||||  |||||||| |||| |||||||    
T  23942954 gctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttaggtgtta 23943014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 72
Target Start/End: Original strand, 24629142 - 24629210
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    ||||||||||||| || |||||||||||||||| ||||||||    |||||| |||||| |||||||||    
T  24629142 ggagccgctcattgtcgtgccttgtgcaccggcgaccactcctgtccctcgttagccttaggtgttata 24629210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 21067261 - 21067203
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    ||||||||||||||||| ||||||||||| |||| ||||||| || | ||| |||||||    
T  21067261 gggagccgctcattatcgtgccttgtgcatcggcgaccactctccgttctcatcagcct 21067203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 61
Target Start/End: Original strand, 31817559 - 31817617
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    |||| ||||||||| ||||||||||||||| ||  ||||||||||  ||||||||||||    
T  31817559 gggaaccgctcattgtcatgccttgtgcactggtgaccactccccggcctcgtcagcct 31817617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 26200452 - 26200501
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgt 55  Q
    |||| ||| |||||||||||||||||||| | |||||||||| |||||||    
T  26200452 agccactctttatcatgccttgtgcaccgacgaccactccccttcctcgt 26200501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 53996276 - 53996317
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactc 44  Q
    |||||||||||||| || |||||||||||||||| |||||||    
T  53996276 gggagccgctcattgtcgtgccttgtgcaccggcgaccactc 53996317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Complemental strand, 21067716 - 21067672
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc 47  Q
    |||||||||||||| || |||||| ||||||||| ||||||||||    
T  21067716 gggagccgctcattgtcgtgccttctgcaccggcgaccactcccc 21067672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 27029254 - 27029190
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||| |||| | |||||||  ||| ||||||||||  |||||||||||| ||||||||    
T  27029254 agccgctcattgtcatacattgtgcattggcgaccactccccgccctcgtcagcctcgggtgtta 27029190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 33987238 - 33987290
Alignment:
Q  9 cgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    |||||||| ||||||||||||||| | | |||||||| |||||||| ||||||    
T  33987238 cgctcattgtcatgccttgtgcactgacgaccactcctcatcctcgccagcct 33987290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 50399157 - 50399197
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccc 46  Q
    ||||||||||| ||||||||||||||| ||| |||||||||    
T  50399157 agccgctcattgtcatgccttgtgcactggcgaccactccc 50399197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 3e-23; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 6331079 - 6331146
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  6331079 gggagccgctcattgtcatgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgtta 6331146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 20126350 - 20126423
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttatagtaag 77  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||  ||||||| ||||||||||||| ||||||    
T  20126350 ggagccgctcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcggccttgggtgttacagtaag 20126423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20896855 - 20896922
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| |||||||||||||| |||| ||||||| || ||||||||||||||||||||||    
T  20896855 gggagccgctcattgtcatgccttgtgcaacggcgaccactctccgtcctcgtcagccttgggtgtta 20896922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 3652958 - 3652891
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  ||||||||| |||||||||||    
T  3652958 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgtta 3652891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 2681384 - 2681450
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || ||||||||| |||||| ||||||||||  |||||||||||||||||||||    
T  2681384 ggagccgctcattgtcgtgccttgtgtaccggcgaccactccccgccctcgtcagccttgggtgtta 2681450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 20850299 - 20850233
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  20850299 ggagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgtta 20850233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 3 - 72
Target Start/End: Complemental strand, 3652465 - 3652396
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    |||||||||||||| || |||||||||||||| | ||||||||||  |||| ||||||||||||||||||    
T  3652465 gggagccgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcatcagccttgggtgttata 3652396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 62
Target Start/End: Original strand, 23986484 - 23986543
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcctt 62  Q
    |||||||||||||| ||||||||||||||||| | ||||||||||  |||||||||||||    
T  23986484 gggagccgctcattgtcatgccttgtgcaccgacgaccactccccgccctcgtcagcctt 23986543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 2891005 - 2891071
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || || |||||||||||||||||| ||||   |||||||||||||||||||||    
T  2891005 ggagccgctcattgtcgtggcttgtgcaccggcaaccagtccctgccctcgtcagccttgggtgtta 2891071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 72
Target Start/End: Complemental strand, 15929172 - 15929109
Alignment:
Q  9 cgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    |||||||| ||||||||||| || | || ||||||||||| |||| ||||||||||||||||||    
T  15929172 cgctcattgtcatgccttgtacatcagcgaccactccccaccctcatcagccttgggtgttata 15929109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 2720737 - 2720798
Alignment:
Q  9 cgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||| || || ||||||||||||| ||||||||||  ||||||||||||| |||||||    
T  2720737 cgctcattgtcgtgacttgtgcaccggcgaccactccccgccctcgtcagccttaggtgtta 2720798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 11062265 - 11062198
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||  ||||||||||  | |||| ||||||||| ||||    
T  11062265 gggagccgctcattgtcgtgccttgtgcaccggtgaccactccccgccttcgtaagccttgggcgtta 11062198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 21311950 - 21311883
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||| |||||||| |  |||||||||||| ||| |||||| |||  |||||||||||||||||||||    
T  21311950 gggagtcgctcattgttgtgccttgtgcactggcgaccacttcccgccctcgtcagccttgggtgtta 21311883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 33775171 - 33775238
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||| |||||||||| |||||||||||||| | |||||| ||  ||||| ||| ||||||||||||    
T  33775171 gggagctgctcattatcgtgccttgtgcaccgacgaccactacctgtcctcatcaaccttgggtgtta 33775238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 17851350 - 17851284
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    ||||||| |||||| |||||||||||||||| | |||| |||  |||||  ||||||||||||||||    
T  17851350 agccgctaattatcgtgccttgtgcaccggcgaacacttcccgccctcggtagccttgggtgttata 17851284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 23776417 - 23776353
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||| || | |||||| || |||| ||||||| |||||||||||||| || |||||||    
T  23776417 agccgctcattgtcgtaccttgtacatcggcgaccactctccatcctcgtcagctttcggtgtta 23776353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 15513180 - 15513247
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  15513180 gggagccgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgtta 15513247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 2193795 - 2193728
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  2193795 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 2193728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 34371590 - 34371524
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  34371590 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 34371524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 34372046 - 34371980
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  34372046 ggagccgctcattgtcctgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 34371980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39146917 - 39146851
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  39146917 ggagccgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgtta 39146851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 20039641 - 20039708
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||| ||||||| ||||||||||||||||||| |||| |||||  |||||||||||||||||||||    
T  20039641 gggagctgctcattgtcatgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgtta 20039708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 17445622 - 17445689
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||  |||||||||||||||| | |||||||||| |||| || ||||||||||||||    
T  17445622 gggagccgctcattgccatgccttgtgcaccgtcgaccactccccgtccttgttagccttgggtgtta 17445689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 18304410 - 18304343
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || || ||||||||||||| | |||||||| |||||||||| |||||||||||    
T  18304410 gggagccgctcattgtcgtgtcttgtgcaccggcgatcactccccgtcctcgtcagtcttgggtgtta 18304343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 34867768 - 34867702
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| || ||||| |  |||||||||||||||||||||    
T  34867768 ggagccgctcattgtcgtgccttgtgcaccggcgactactcctcgccctcgtcagccttgggtgtta 34867702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 5067059 - 5067124
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| |  || |||| |||||||| ||||||||||||||||||||||| |||||||||    
T  5067059 gagccgctcattgttgtgtcttgcgcaccggcgaccactccccatcctcgtcagccatgggtgtta 5067124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 42788830 - 42788879
Alignment:
Q  21 tgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  42788830 tgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 42788879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 21886314 - 21886380
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||| ||  |||| |||||||| |||||||    
T  21886314 ggagccgctcattgtcgtgccttgtgcaccggcgaccactctccgccctcatcagccttcggtgtta 21886380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 12 - 61
Target Start/End: Original strand, 16370884 - 16370933
Alignment:
Q  12 tcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    ||||| |||| |||||||||||| ||||||||||||||||||||| ||||    
T  16370884 tcattgtcataccttgtgcaccgacaaccactccccatcctcgtcggcct 16370933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 4102791 - 4102725
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||  |||||||||||||||||| || | | |||||||||||||| ||||||| || |||||    
T  4102791 ggagccgcatattatcatgccttgtgcatcgacgatcactccccatcctcatcagcctcggatgtta 4102725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 27647002 - 27647046
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc 47  Q
    ||||||||| ||||  | |||||||||||||||||||||||||||    
T  27647002 gggagccgcacattggcgtgccttgtgcaccggcaaccactcccc 27647046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 29804661 - 29804594
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  29804661 gggagccgctcattatcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgtta 29804594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 8256505 - 8256438
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| || |||||||| |||||||||||||||||||||    
T  8256505 gggagccgctcattgtcgtgccttgtgcaccggcgactactccccaccctcgtcagccttgggtgtta 8256438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 27883093 - 27883160
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| |||||||||| |||||||||||||||| |||||    
T  27883093 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttggatgtta 27883160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 33174937 - 33174870
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| |||||| ||||||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  33174937 gggagccactcattgtcatgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 33174870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 33770988 - 33770922
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  33770988 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 33770922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 25338165 - 25338231
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  25338165 ggagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgtta 25338231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 41754267 - 41754201
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||| ||||||||||||    
T  41754267 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgggtgtta 41754201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 3 - 69
Target Start/End: Complemental strand, 1707021 - 1706955
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtt 69  Q
    |||||||||||||| || |||||||||||||| | ||||||||||  |||||| |||||||||||||    
T  1707021 gggagccgctcattgtcgtgccttgtgcaccgacgaccactccccgccctcgttagccttgggtgtt 1706955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 25434224 - 25434290
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || ||||||||||||||||  |||||||||  |||||||||||||| ||||||    
T  25434224 ggagccgctcattgtcgtgccttgtgcaccggcggccactccccgccctcgtcagccttgtgtgtta 25434290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 15619877 - 15619810
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||   ||| |||| |||||||||||    
T  15619877 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgctctcatcagtcttgggtgtta 15619810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 15639719 - 15639652
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||   ||| |||| |||||||||||    
T  15639719 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgctctcatcagtcttgggtgtta 15639652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 68
Target Start/End: Original strand, 18448085 - 18448150
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgt 68  Q
    |||| ||||||||| || |||||||||||||||| ||||||||||  ||||| ||||||| |||||    
T  18448085 gggaaccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgccagccttaggtgt 18448150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 16379372 - 16379304
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatc-ctcgtcagccttgggtgtta 70  Q
    |||||| ||||||| || |||||||||||||||| |||||||||   | |||||||||| |||||||||    
T  16379372 gggagctgctcattgtcgtgccttgtgcaccggcgaccactcccttgctctcgtcagccgtgggtgtta 16379304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 18098728 - 18098796
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc-atcctcgtcagccttgggtgtta 70  Q
    |||||||||||| | || |||||||||||||||| | ||||||||   ||||||||||| |||||||||    
T  18098728 gggagccgctcaatgtcgtgccttgtgcaccggcgatcactcccctgccctcgtcagccgtgggtgtta 18098796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 18099045 - 18099113
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc-atcctcgtcagccttgggtgtta 70  Q
    |||||| ||||||| || |||||||||||||||| | ||||||||   ||||||||||| |||||||||    
T  18099045 gggagctgctcattgtcgtgccttgtgcaccggcgatcactcccctgccctcgtcagccgtgggtgtta 18099113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 43057231 - 43057298
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  43057231 gggagtcgctcattgtcatgccttgtgcaccggcaaccactccccgtcctcgtcagccttgggtgtta 43057298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20845829 - 20845895
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  20845829 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgtta 20845895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 16452100 - 16452167
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  16452100 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 16452167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 16461253 - 16461320
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  16461253 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 16461320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20054248 - 20054314
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20054248 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20054314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20054704 - 20054770
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20054704 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20054770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20055160 - 20055226
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20055160 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20055226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20055616 - 20055682
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20055616 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20055682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20056072 - 20056138
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20056072 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20056528 - 20056594
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20056528 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20056594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20056975 - 20057041
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20056975 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20057041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20057431 - 20057497
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  20057431 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 20057497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 38340882 - 38340818
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||| || |||||||||||||||  ||||||||||| |||||||||||||||||||||    
T  38340882 agccgctcattgtcgtgccttgtgcaccggtgaccactccccaccctcgtcagccttgggtgtta 38340818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 20057887 - 20057953
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||| ||||||||||||    
T  20057887 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcaaccttgggtgtta 20057953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 10820568 - 10820507
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtg 67  Q
    ||||| ||||| |||||| |||||||||||| |||||| |||||||||||||||||||||||    
T  10820568 agccgttcattgtcatgctttgtgcaccggcgaccacttcccatcctcgtcagccttgggtg 10820507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 43057690 - 43057757
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||  |||||||||||||||||| |||| |||||  |||| ||||||||||||||||    
T  43057690 gggagccgctcattggcatgccttgtgcaccggcgaccattccccgccctcttcagccttgggtgtta 43057757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 66
Target Start/End: Complemental strand, 52250185 - 52250122
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggt 66  Q
    |||||||||||||| || |||||||||||||||| ||| ||||||  |||||||||||||||||    
T  52250185 gggagccgctcattgtcgtgccttgtgcaccggcgaccgctccccgccctcgtcagccttgggt 52250122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 68
Target Start/End: Complemental strand, 12883501 - 12883438
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgt 68  Q
    |||||||||||| || |||||||||||||| | ||||||| ||| |||||| ||||||| ||||    
T  12883501 gagccgctcattgtcgtgccttgtgcaccgacgaccactcaccaccctcgttagccttgagtgt 12883438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 51373041 - 51373108
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||| |||||||| || |||||| ||||| |||||||||||  | |||||||||| |||||||||||    
T  51373041 gggagtcgctcattgtcgtgccttatgcactggcaaccactcttcgtcctcgtcagtcttgggtgtta 51373108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 28453318 - 28453251
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  28453318 gggagccgctcattgtcgtgccttgtgcaccggcaaccactccccgccctcgtcagccttgggtgtta 28453251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 66
Target Start/End: Original strand, 27022505 - 27022568
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggt 66  Q
    |||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||    
T  27022505 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggt 27022568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 10844861 - 10844795
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  10844861 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 10844795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 12827422 - 12827488
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| | ||||||||| |||||||||||||||||||||    
T  12827422 ggagccgctcattgtcgtgccttgtgcaccggcgatcactccccaccctcgtcagccttgggtgtta 12827488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 22026357 - 22026291
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  22026357 ggagccgctcattgtcatgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgtta 22026291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 22549163 - 22549229
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  22549163 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 22549229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 27925877 - 27925811
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || ||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  27925877 ggagccgctcattgtcgtgccttgtgcaccagcgaccactccccgtcctcgtcagccttgggtgtta 27925811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 32292376 - 32292309
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| | ||||||||  |||||||||||||||||||||    
T  32292376 gggagccgctcattgtcgtgccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgtta 32292309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 8080511 - 8080576
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| || |||||||||||||||| |||||||| |  |||||||||||||||||||||    
T  8080511 gagccgctcattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgggtgtta 8080576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 6465077 - 6465144
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||||| |||||||||||||||| |||||||| |  ||||||||| | |||||||||    
T  6465077 gggagccgctcattatcgtgccttgtgcaccggcgaccactcctcgccctcgtcagacgtgggtgtta 6465144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 22840696 - 22840763
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||||| || ||| ||||||||| ||||||||||  ||| |||||||||||||||||    
T  22840696 gggagccgctcattatcgtgtcttatgcaccggcgaccactccccgcccttgtcagccttgggtgtta 22840763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 6466689 - 6466623
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||| ||||||| |||||| | ||||||    
T  6466689 ggagctgctcattgtcatgccttgtgcactggcaaccactcccgatcctcgccagcctcgagtgtta 6466623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Original strand, 22548717 - 22548783
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| |  |||||||||||| ||| ||||||||||| |||| ||||||||||||||||    
T  22548717 ggagccgctcattgtagtgccttgtgcactggcgaccactccccaccctcatcagccttgggtgtta 22548783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 27022050 - 27022111
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgg 64  Q
    ||||||| |||||| || ||||||||||||| || ||||||||||| |||||||||||||||    
T  27022050 gggagccactcattgtcgtgccttgtgcacccgcgaccactccccaccctcgtcagccttgg 27022111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 33852425 - 33852491
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| |||||| | |  |||||||||||||||||||||    
T  33852425 gggagccgctcattgtcgtgccttgtgcaccggcgaccact-cacgccctcgtcagccttgggtgtta 33852491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 41659272 - 41659338
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| |||||| || ||| |||||||||||| ||||||||||  ||||||||||||| |||||||    
T  41659272 gggagccactcattgtcgtgc-ttgtgcaccggcgaccactccccgccctcgtcagccttaggtgtta 41659338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 16811360 - 16811293
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  16811360 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgtta 16811293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39653142 - 39653076
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| |||||||||| ||||||||||||||||||||||    
T  39653142 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgtcctcgtcagccttgggtgtta 39653076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 39653598 - 39653532
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||||||    
T  39653598 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagccttgggtgtta 39653532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 74
Target Start/End: Complemental strand, 50347725 - 50347654
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttatagt 74  Q
    |||||||||||||| || | |||||||||||||| | ||||||||  |||||||||||||||||||||||||    
T  50347725 gggagccgctcattgtcgttccttgtgcaccggcgatcactccccgccctcgtcagccttgggtgttatagt 50347654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Complemental strand, 16810904 - 16810840
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtg 67  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  ||||||||||||| ||||    
T  16810904 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttcggtg 16810840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Original strand, 25803174 - 25803238
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||| | |||||||||||||| || |||||||||| |||| |||||||||||||||||    
T  25803174 agccgctcattgttatgccttgtgcaccagcgaccactccccgtcctagtcagccttgggtgtta 25803238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 28561722 - 28561658
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||| || |||||||||||||||| ||||||||||  ||||||||| |||||||||||    
T  28561722 agccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagtcttgggtgtta 28561658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 11180200 - 11180267
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || | |||||||||||||| ||||||||||  |||| ||||||||||||||||    
T  11180200 gggagccgctcattgtcgtaccttgtgcaccggcgaccactccccgccctcttcagccttgggtgtta 11180267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 2911069 - 2911007
Alignment:
Q  8 ccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||| |||||| || ||||||||||||| |||||||||| |||||||||  |||||||||||    
T  2911069 ccgcttattatcgtgtcttgtgcaccggcgaccactccccgtcctcgtcaatcttgggtgtta 2911007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Original strand, 13150268 - 13150332
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| || |||||||||||||||| | ||||||||  |||| ||||||||||||||||    
T  13150268 gagccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcatcagccttgggtgtta 13150332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Original strand, 25238860 - 25238905
Alignment:
Q  25 ttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||    
T  25238860 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 25238905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 29224302 - 29224245
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    ||||||||||||| ||||||||| || || |||||||||||||| ||||| |||||||    
T  29224302 ggagccgctcattgtcatgccttctgaactggcaaccactccccgtcctcatcagcct 29224245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 70
Target Start/End: Complemental strand, 14813925 - 14813861
Alignment:
Q  6 agccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| ||| || |||||||||||||||| |||||||| |  |||||||||||||| ||||||    
T  14813925 agccgctaattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttgtgtgtta 14813861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 970944 - 970878
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || | |||||||| | ||||||||||||||  ||||| | |||||||||||||    
T  970944 ggagccgctcattgtcgtaccttgtgccctggcaaccactccccgccctcgccggccttgggtgtta 970878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Original strand, 13155374 - 13155435
Alignment:
Q  8 ccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||| || |||||||||||||||| | ||||||||  |||||||||| ||||||||||    
T  13155374 ccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgtta 13155435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 14814364 - 14814318
Alignment:
Q  23 ccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtt 69  Q
    |||||||||||||  ||||||||||  ||||||||||||||||||||    
T  14814364 ccttgtgcaccggtgaccactccccgccctcgtcagccttgggtgtt 14814318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 48
Target Start/End: Original strand, 43737052 - 43737089
Alignment:
Q  11 ctcattatcatgccttgtgcaccggcaaccactcccca 48  Q
    ||||||||| || |||||||||||||||||||||||||    
T  43737052 ctcattatcgtgtcttgtgcaccggcaaccactcccca 43737089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 59
Target Start/End: Original strand, 32227388 - 32227444
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagc 59  Q
    |||||||||||||| |  |||||||||||| ||| ||||||||||  ||||||||||    
T  32227388 gggagccgctcattgttgtgccttgtgcactggcgaccactccccgccctcgtcagc 32227444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 2611819 - 2611886
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||| ||||||||||||| |||||||    
T  2611819 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccaccctcgtcagcctttggtgtta 2611886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 6747765 - 6747832
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||||||||||||    
T  6747765 gggagccgctcattgtcatgccttgtgcaccggcgaccactccctgccctcgtcagccttgggtgtta 6747832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 34405758 - 34405825
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  34405758 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 34405825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 36422231 - 36422164
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||||| ||||||||||||||||||| | |||||||||||    
T  36422231 gggagccgctcattgtcgtgccttgtgcaccggcgaccactccccatcctcgtcggtcttgggtgtta 36422164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 2463620 - 2463554
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  2463620 ggagccgttcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 2463554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 10430741 - 10430675
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||| ||||||||||||||||    
T  10430741 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcatcagccttgggtgtta 10430675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 2189122 - 2189056
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||| ||||| ||||||    
T  2189122 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcatccttgagtgtta 2189056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 679796 - 679729
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||| ||||||| || ||| ||||||| |||| |||||||||| |||||||||||||| |||||||    
T  679796 gggagcagctcattgtcgtgctttgtgcatcggcgaccactccccgtcctcgtcagccttaggtgtta 679729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 16812005 - 16812072
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||  | || ||||||||||||||||||||||||  ||| ||||||||||| |||||    
T  16812005 gggagccgctcattggcgtgtcttgtgcaccggcaaccactccccgccctagtcagccttggatgtta 16812072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 43233391 - 43233325
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||| ||||||||| |||||||| |   ||||||||||||||||||||    
T  43233391 ggagccgctcattgtcgtgccttatgcaccggcgaccactcctcgcactcgtcagccttgggtgtta 43233325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 2189557 - 2189512
Alignment:
Q  25 ttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||    
T  2189557 ttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 2189512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 72
Target Start/End: Complemental strand, 9623179 - 9623119
Alignment:
Q  11 ctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgttata 72  Q
    |||||||||||| ||||||||||||||| |||||||  ||||| |||| |||||||||||||    
T  9623179 ctcattatcatgtcttgtgcaccggcaatcactcccagtcctcatcag-cttgggtgttata 9623119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 26957724 - 26957791
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || |||||||||||||| | |||||| |||  ||||||| ||||| |||||||    
T  26957724 gggagccgctcattgtcgtgccttgtgcaccgacgaccacttcccgccctcgtcggcctttggtgtta 26957791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 35527288 - 35527348
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgg 64  Q
    ||||||||||||||  | || ||||||||||| | |||||||||| ||||||||||||||||    
T  35527288 gggagccgctcattg-cgtgtcttgtgcaccgacgaccactccccgtcctcgtcagccttgg 35527348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 6719230 - 6719274
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc 47  Q
    ||||||||||||||  | |||||||||||||||| ||||||||||    
T  6719230 gggagccgctcattggcgtgccttgtgcaccggcgaccactcccc 6719274  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Complemental strand, 16812194 - 16812146
Alignment:
Q  22 gccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||||||||||||||||  ||| |||| |||||| |||||    
T  16812194 gccttgtgcaccggcaaccactccccgccctagtcaaccttggatgtta 16812146  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 29039178 - 29039222
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc 47  Q
    |||||||||||||| || |||||||||||||||| | ||||||||    
T  29039178 gggagccgctcattgtcgtgccttgtgcaccggcgatcactcccc 29039222  T

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Target: scaffold0243 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 1198 - 1132
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| ||||||||||  |||||||||||||||||||||    
T  1198 ggagccgctcattgtcgtgccttgtgcaccggcgaccactccccgccctcgtcagccttgggtgtta 1132  T

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Target: scaffold0088 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 23651 - 23585
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || |||||||||||||||| |||| |||||  |||||||||||||||||||||    
T  23651 ggagccgctcattgtcgtgccttgtgcaccggcgaccattccccgccctcgtcagccttgggtgtta 23585  T

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Target: scaffold0168 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 70
Target Start/End: Complemental strand, 2721 - 2654
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||| |||||| || |||||||||| ||||| ||||||||||  |||||||||||||||||||||    
T  2721 gggagccactcattgtcgtgccttgtgctccggcgaccactccccgccctcgtcagccttgggtgtta 2654  T

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Target: scaffold0333 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 4539 - 4473
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||||||| || ||||||||||||||||  ||||||| |  |||||||||||||||||||||    
T  4539 ggagccgctcattgtcgtgccttgtgcaccggcggccactcctcgccctcgtcagccttgggtgtta 4473  T

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Target: scaffold0333; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 4994 - 4928
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||| ||| || |||||||||||||||| |||||||| |  ||||||||||||| |||||||    
T  4994 ggagccgctaattgtcgtgccttgtgcaccggcgaccactcctcgccctcgtcagccttaggtgtta 4928  T

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Target: scaffold0391 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 4 - 61
Target Start/End: Complemental strand, 14720 - 14663
Alignment:
Q  4 ggagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagcct 61  Q
    ||||||||||||| ||||||||| ||||||||| ||||||| || |||||||||||||    
T  14720 ggagccgctcattgtcatgccttttgcaccggcgaccactctccgtcctcgtcagcct 14663  T

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Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 70
Target Start/End: Original strand, 17846 - 17914
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactccccat-cctcgtcagccttgggtgtta 70  Q
    |||||||||||||| || ||||| |||||||||| |||||||||| | ||||||||||| |||||||||    
T  17846 gggagccgctcattgtcgtgcctcgtgcaccggcgaccactccccttccctcgtcagccgtgggtgtta 17914  T

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Target: scaffold0047; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 17765 - 17809
Alignment:
Q  3 gggagccgctcattatcatgccttgtgcaccggcaaccactcccc 47  Q
    |||||||||||||| || ||||| |||||||||| ||||||||||    
T  17765 gggagccgctcattgtcgtgcctggtgcaccggcgaccactcccc 17809  T

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Target: scaffold0002 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 154734 - 154670
Alignment:
Q  5 gagccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    |||||||||||| || |||||||||||||||| | ||||||||  |||| ||||||||||||||||    
T  154734 gagccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcatcagccttgggtgtta 154670  T

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Target: scaffold0002; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 70
Target Start/End: Complemental strand, 151614 - 151553
Alignment:
Q  8 ccgctcattatcatgccttgtgcaccggcaaccactccccatcctcgtcagccttgggtgtta 70  Q
    ||||||||| || |||||||||||||||| | ||||||||  |||||||||| ||||||||||    
T  151614 ccgctcattgtcgtgccttgtgcaccggcga-cactccccgccctcgtcagcattgggtgtta 151553  T

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