View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_18 (Length: 215)

Name: NF18459_low_18
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_18
NF18459_low_18
[»] chr3 (28 HSPs)
chr3 (1-212)||(8569695-8569906)
chr3 (8-172)||(5267182-5267343)
chr3 (7-178)||(6839651-6839822)
chr3 (31-171)||(6592108-6592248)
chr3 (19-178)||(7586983-7587142)
chr3 (12-178)||(6141413-6141579)
chr3 (8-178)||(6264812-6264982)
chr3 (8-172)||(4389682-4389843)
chr3 (31-171)||(6722834-6722974)
chr3 (48-171)||(6916235-6916358)
chr3 (12-178)||(6258329-6258495)
chr3 (31-178)||(6237880-6238027)
chr3 (19-178)||(6795376-6795535)
chr3 (19-178)||(8470678-8470837)
chr3 (27-139)||(8453813-8453925)
chr3 (15-137)||(6555217-6555339)
chr3 (27-171)||(6899222-6899366)
chr3 (94-170)||(7749137-7749213)
chr3 (31-178)||(6168018-6168165)
chr3 (85-175)||(5262907-5262997)
chr3 (94-152)||(5279806-5279864)
chr3 (19-142)||(5249325-5249445)
chr3 (106-175)||(5297854-5297923)
chr3 (12-178)||(6244420-6244586)
chr3 (13-137)||(6735118-6735242)
chr3 (31-171)||(6881650-6881790)
chr3 (122-178)||(13271399-13271455)
chr3 (14-64)||(8588969-8589019)
[»] scaffold0958 (1 HSPs)
scaffold0958 (1-212)||(607-816)
[»] chr7 (1 HSPs)
chr7 (13-178)||(6574072-6574237)
[»] scaffold1643 (1 HSPs)
scaffold1643 (19-178)||(1279-1438)
[»] scaffold0425 (1 HSPs)
scaffold0425 (13-137)||(8254-8378)


Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 8569695 - 8569906
Alignment:
Q  1 tgactcgcacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctccc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8569695 tgactcgcacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagaatgttctgaattgaccaagctccc 8569794  T
Q  101 ttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagatcaggaaactgaatgatcttcaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  8569795 ttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagatcaggaagctgaatgatcttcaa 8569894  T
Q  201 accttgactgat 212  Q
    ||||||||||||    
T  8569895 accttgactgat 8569906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 172
Target Start/End: Complemental strand, 5267343 - 5267182
Alignment:
Q  8 cacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatat 107  Q
    |||| |||||||||||||||||||||||||||||||  ||||||||||||| |||||| |||||| | | |||||   ||||||| ||||||||||| ||    
T  5267343 cacaaagattaaaaggttgcctgattccatttgtaacctgtataatttacagacactactattggcatattgttc---attgaccgagctcccttcagat 5267247  T
Q  108 ttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaa 172  Q
    |||||||||||| | || ||||| |||||| ||||  || ||||| |||| ||||||||||||||    
T  5267246 ttttacaaacttacaaacttacgtcatcttgatctggaatgcactcatataaagaagatgccaaa 5267182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 7 - 178
Target Start/End: Original strand, 6839651 - 6839822
Alignment:
Q  7 gcacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcata 106  Q
    ||||| |||||||||||||||| ||||| ||||||||  | ||||||||| | ||||||||||||||  | |||| |||||||||  | ||||||||| |    
T  6839651 gcacacagattaaaaggttgccagattctatttgtaacctttataatttagagacactaatattggagaagtgttatgaattgactgaactcccttcaaa 6839750  T
Q  107 tttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    |||||||||||| | || ||||||||||||||||||  |||||  | |||| ||||||||||||||| ||||    
T  6839751 tttttacaaactagtcagtttacgccatcttaatcttgaaggctgtaatataaagaagatgccaaagaagat 6839822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 6592108 - 6592248
Alignment:
Q  31 attccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacg 130  Q
    |||||||||||| | |||||||||| |||||| |  |||||||||| |||| | |||||||| | ||||||||| ||||| |||||||   |||||| ||    
T  6592108 attccatttgtacgctgtataatttgcaaacattcttattggaagaatgttttaaattgaccgaactcccttcagattttcacaaactcatcaatttgcg 6592207  T
Q  131 ccatcttaatctaaaaggcactgatattaagaagatgccaa 171  Q
    |||||||||||| ||||||||| ||||||||||||||||||    
T  6592208 ccatcttaatctgaaaggcactcatattaagaagatgccaa 6592248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 7587142 - 7586983
Alignment:
Q  19 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaact 118  Q
    ||||||||||||| || ||||||||| |||| || ||| | ||||||||| |||||||||||| ||||||||| || ||||||||| | ||||||||| |    
T  7587142 aaaggttgcctgactcaatttgtaagctgtacaaattagagacactaatactggaagactgttttgaattgactaaactcccttcaaaattttacaaatt 7587043  T
Q  119 tgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    ||  | ||||||||||||| ||||  |||||  | |||| ||||||||||||||| ||||    
T  7587042 tgtgagtttacgccatcttcatcttgaaggctgtaatataaagaagatgccaaagaagat 7586983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 6141579 - 6141413
Alignment:
Q  12 gagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttt 111  Q
    ||||||| ||| || ||| |||||||||||||| |||||||||| || || ||  || ||||||| |||| | |||||||  ||||||| ||| ||||||    
T  6141579 gagattacaagcttacctaattccatttgtaagctgtataatttgcataccctcttactggaagaatgttttaaattgactgagctcccatcaaattttt 6141480  T
Q  112 acaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
     |||||| | ||||||||| ||||||||| | ||||||||  |||||||||||||||||||| ||||    
T  6141479 gcaaactcgtcaatttacgtcatcttaatttgaaaggcacacatattaagaagatgccaaaggagat 6141413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 6264982 - 6264812
Alignment:
Q  8 cacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatat 107  Q
    ||||||||||| ||| || ||| |||||||||||||| |||||| ||| || || ||  || ||||||| |||| | |||||||  ||||||| ||| ||    
T  6264982 cacagagattacaagcttacctaattccatttgtaagctgtatagtttgcataccctcttactggaagaatgttttaaattgactgagctcccatcaaat 6264883  T
Q  108 ttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    |||| |||||| | ||||||||| ||||||||| | ||||||||  |||||||||||||||||||| ||||    
T  6264882 ttttgcaaactcgtcaatttacgtcatcttaatttgaaaggcacacatattaagaagatgccaaaggagat 6264812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 8 - 172
Target Start/End: Original strand, 4389682 - 4389843
Alignment:
Q  8 cacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatat 107  Q
    |||| |||||||||||||||||||||||||||||||  | ||||||||||| |||||| |||||| | | ||| |   ||| ||  ||||||||||| ||    
T  4389682 cacaaagattaaaaggttgcctgattccatttgtaacctatataatttacagacactactattggcatattgtcc---attaactgagctcccttcagat 4389778  T
Q  108 ttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaa 172  Q
    |||||||||||| | || ||||| |||||| ||||  ||||||||  ||| ||||||||||||||    
T  4389779 ttttacaaacttacaaacttacgtcatcttgatctggaaggcactcttataaagaagatgccaaa 4389843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 171
Target Start/End: Original strand, 6722834 - 6722974
Alignment:
Q  31 attccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacg 130  Q
    |||||||||||| | | |||||||| || |||||  |||||||||| || | | ||||||| ||||| |||||| || | |||||||| | |||||||||    
T  6722834 attccatttgtatgctatataatttgcagacactcttattggaagagtgctttaaattgactaagctaccttcagatatctacaaactcgtcaatttacg 6722933  T
Q  131 ccatcttaatctaaaaggcactgatattaagaagatgccaa 171  Q
      |||||||||| ||||||||| ||||||||||||||||||    
T  6722934 ttatcttaatctgaaaggcactcatattaagaagatgccaa 6722974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 48 - 171
Target Start/End: Complemental strand, 6916358 - 6916235
Alignment:
Q  48 tataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacgccatcttaatctaaaag 147  Q
    ||||||||||| |||||  |||||||||| ||||   |||||||  ||||||||| | |||||  |||||| | ||| ||||||||||||||||| ||||    
T  6916358 tataatttacagacactcttattggaagaatgttggaaattgactgagctccctttagattttggcaaactcgtcaacttacgccatcttaatctgaaag 6916259  T
Q  148 gcactgatattaagaagatgccaa 171  Q
    ||||| ||||||||||||||||||    
T  6916258 gcactcatattaagaagatgccaa 6916235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 6258495 - 6258329
Alignment:
Q  12 gagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttt 111  Q
    ||||||| ||| || |||||||||||||||| |||||||||||| || |||||  || ||||||| |||| | || ||||  ||||||| ||| |||||     
T  6258495 gagattacaagtttacctgattccatttgtatgttgtataatttgcatacactcttactggaagaatgttttaaactgactgagctcccatcaaattttc 6258396  T
Q  112 acaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    |||| ||   ||||||| | ||||||||| | ||||||||  |||||||||||||||||||| ||||    
T  6258395 acaatctcatcaatttatgtcatcttaatttgaaaggcacgcatattaagaagatgccaaagaagat 6258329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 6238027 - 6237880
Alignment:
Q  31 attccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacg 130  Q
    |||||||||| | |||||||||||| || || ||  ||  |||||| |||| | ||||||| |||||||| ||| |||||| |||||||  |||||||||    
T  6238027 attccatttgcatgttgtataatttgcatacgctcttaccggaagaatgttttaaattgactaagctcccatcaaatttttgcaaacttatcaatttacg 6237928  T
Q  131 ccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
     ||||||||| | ||||| ||  |||||||||||||||||||| ||||    
T  6237927 tcatcttaatttgaaaggaacgcatattaagaagatgccaaaggagat 6237880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 178
Target Start/End: Original strand, 6795376 - 6795535
Alignment:
Q  19 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaact 118  Q
    ||||||| ||||| || ||||||||| |||| || ||| | ||||| ||| |||||| ||||| | | ||||| |  ||||||||| | |||||||||||    
T  6795376 aaaggtttcctgactcaatttgtaagctgtacaaattagagacactgatactggaaggctgttattatttgactacactcccttcaaagttttacaaact 6795475  T
Q  119 tgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    ||  | |||||||||||||||||| ||||||  | |||| ||||| ||||||||||||||    
T  6795476 tgttagtttacgccatcttaatcttaaaggctgtcatataaagaaaatgccaaagcagat 6795535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 8470837 - 8470678
Alignment:
Q  19 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaact 118  Q
    ||||||||||||| || ||||||||| || |||| ||| | ||| ||||| | |||| ||||||| ||||||| || ||||||||| |||||||||||||    
T  8470837 aaaggttgcctgactcaatttgtaagctgaataaattagagacattaatactagaaggctgttctaaattgactaaactcccttcaaatttttacaaact 8470738  T
Q  119 tgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    ||    |||||||||||| |||||  |||||  | |||| ||| | ||||||||||||||    
T  8470737 tgtttgtttacgccatctcaatcttgaaggctgtaatataaaggaaatgccaaagcagat 8470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 8453925 - 8453813
Alignment:
Q  27 cctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatt 126  Q
    |||||| ||||||||| |||| ||||||| ||||||||  |  |||||| ||||| |||||||||  ||||||||||| |||||| |||||| | |||||    
T  8453925 cctgataccatttgtatgttgcataatttgcaaacactcttgctggaaggctgttgtgaattgacagagctcccttcaaatttttccaaactcgtcaatt 8453826  T
Q  127 tacgccatcttaa 139  Q
    |||| ||||||||    
T  8453825 tacgtcatcttaa 8453813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 6555217 - 6555339
Alignment:
Q  15 attaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttaca 114  Q
    |||||||| || |||||| ||||||||| |||||||||||| ||||||||  | ||  ||||||||| | |||||||  ||||||||||| |||||| ||    
T  6555217 attaaaagcttacctgataccatttgtatgttgtataatttgcaaacactcttgttaaaagactgttatcaattgactgagctcccttcaaatttttcca 6555316  T
Q  115 aacttgccaatttacgccatctt 137  Q
    ||||   ||||||||| ||||||    
T  6555317 aactcatcaatttacgtcatctt 6555339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 171
Target Start/End: Complemental strand, 6899366 - 6899222
Alignment:
Q  27 cctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatt 126  Q
    |||||||||||||||| | |||||||||| || |||||  || || |||  |||| | || ||||  ||||||||||| |||||| |||||| | ||||     
T  6899366 cctgattccatttgtatgctgtataatttgcagacactcttactgcaaggttgttttaaactgactgagctcccttcagatttttgcaaactcgtcaatc 6899267  T
Q  127 tacgccatcttaatctaaaaggcactgatattaagaagatgccaa 171  Q
    |||| |||||||||||  |||||||| |||| | |||||||||||    
T  6899266 tacgtcatcttaatctgcaaggcactcatataatgaagatgccaa 6899222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 170
Target Start/End: Complemental strand, 7749213 - 7749137
Alignment:
Q  94 agctcccttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgcca 170  Q
    |||| |||||| |||||| ||||||   ||||||||| |||||||||||||| |||||| |||||||||||||||||    
T  7749213 agctgccttcagatttttgcaaactcatcaatttacgtcatcttaatctaaacggcactcatattaagaagatgcca 7749137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 31 - 178
Target Start/End: Complemental strand, 6168165 - 6168018
Alignment:
Q  31 attccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacg 130  Q
    |||||||||||| | |||||||||| || || ||  || ||||||| |||| | |||||||  ||||||| ||| |||||  ||||||   |||||||||    
T  6168165 attccatttgtatgctgtataatttgcatacgctcttactggaagaatgttttaaattgactgagctcccatcaaattttggcaaactcatcaatttacg 6168066  T
Q  131 ccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
     ||||||||| | ||||||||  |||| ||||||||||||||| ||||    
T  6168065 tcatcttaatttgaaaggcacacatatcaagaagatgccaaaggagat 6168018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 175
Target Start/End: Complemental strand, 5262997 - 5262907
Alignment:
Q  85 aattgaccaagctcccttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagca 175  Q
    |||||||  ||||||||||| ||||||| ||||| | |||||||||||||||||||||| || |||||  |||   |||||||||||||||    
T  5262997 aattgacggagctcccttcagatttttataaactcgtcaatttacgccatcttaatctagaaagcactcttatctcgaagatgccaaagca 5262907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 94 - 152
Target Start/End: Complemental strand, 5279864 - 5279806
Alignment:
Q  94 agctcccttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcact 152  Q
    ||||||||||| ||||||||||||||| ||||||||| |||||||||||| || |||||    
T  5279864 agctcccttcaaatttttacaaacttgtcaatttacgtcatcttaatctagaaagcact 5279806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 5249445 - 5249325
Alignment:
Q  19 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaact 118  Q
    |||| ||||||||||||||||||||  | |||||||||||||||||  ||||| || | ||| |   ||||||  ||||||||||| |||||||||||||    
T  5249445 aaagtttgcctgattccatttgtaacctatataatttacaaacactgctattgaaaaattgtcc---attgactgagctcccttcagatttttacaaact 5249349  T
Q  119 tgccaatttacgccatcttaatct 142  Q
    |  ||||||||  |||||| ||||    
T  5249348 tagcaatttacatcatcttgatct 5249325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 5297923 - 5297854
Alignment:
Q  106 atttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagca 175  Q
    ||||||||||||| | || ||||||||||||||  |||||||||||| |||| |||||||||||| ||||    
T  5297923 atttttacaaactcgtcagtttacgccatcttatcctaaaaggcactcatataaagaagatgccagagca 5297854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 6244586 - 6244420
Alignment:
Q  12 gagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttt 111  Q
    ||||||| ||| || ||| |||||||||||| |||||||||||| || || ||  || ||||||| |||| | || |     |||||||  || ||||||    
T  6244586 gagattacaagcttacctaattccatttgtatgttgtataatttgcatacgctcttactggaagaatgttttaaactacttgagctcccgccaaattttt 6244487  T
Q  112 acaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
     ||||||   ||||||||| ||||||||| | ||||||||  |||||||||||||||||||| ||||    
T  6244486 gcaaactcatcaatttacgtcatcttaatttgaaaggcacccatattaagaagatgccaaaggagat 6244420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Complemental strand, 6735242 - 6735118
Alignment:
Q  13 agattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttta 112  Q
    |||||| ||| || |||||| ||||||||| |||||||||||||||||||||  | ||  |||  |||  | |||||||  ||||||||||| ||||||     
T  6735242 agattagaagcttacctgataccatttgtatgttgtataatttacaaacactcttgttaaaaggttgtcgtcaattgactgagctcccttcaaatttttc 6735143  T
Q  113 caaacttgccaatttacgccatctt 137  Q
    |||||| | ||||||| | ||||||    
T  6735142 caaactcgtcaatttatgtcatctt 6735118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 171
Target Start/End: Complemental strand, 6881790 - 6881650
Alignment:
Q  31 attccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaacttgccaatttacg 130  Q
    |||||||||||| ||||||||||||||| |||||  |||||||||| ||||   |||||    | || ||  || |||||| ||| ||   || ||||||    
T  6881790 attccatttgtatgttgtataatttacagacactcttattggaagaatgtttcaaattgcttgaacttccaacagatttttgcaagctcatcagtttacg 6881691  T
Q  131 ccatcttaatctaaaaggcactgatattaagaagatgccaa 171  Q
     ||||||||||| | ||||||| ||||||||||||||||||    
T  6881690 tcatcttaatctgacaggcactcatattaagaagatgccaa 6881650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 13271399 - 13271455
Alignment:
Q  122 caatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    ||||||||| ||||||||| | ||||||||  |||||||||||||||||||| ||||    
T  13271399 caatttacgtcatcttaatttgaaaggcacgcatattaagaagatgccaaaggagat 13271455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 64
Target Start/End: Complemental strand, 8589019 - 8588969
Alignment:
Q  14 gattaaaaggttgcctgattccatttgtaagttgtataatttacaaacact 64  Q
    ||||| ||| || |||||| ||||||||| |||||||||||||||||||||    
T  8589019 gattacaagcttacctgataccatttgtatgttgtataatttacaaacact 8588969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0958 (Bit Score: 129; Significance: 6e-67; HSPs: 1)
Name: scaffold0958
Description:

Target: scaffold0958; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 607 - 816
Alignment:
Q  1 tgactcgcacagagattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctccc 100  Q
    ||||||||||  |||||||||||||| ||||||||||  |||||||||| || ||| ||||||||||||||||| ||||||||||||||||||| |||||    
T  607 tgactcgcacgaagattaaaaggttggctgattccat--gtaagttgtaaaacttataaacactaatattggaaaactgttctgaattgaccaaactccc 704  T
Q  101 ttcatatttttacaaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagatcaggaaactgaatgatcttcaa 200  Q
    ||||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||| || || |||||||||    
T  705 ttcatatttttacaaactttccagtttacgtcatcttaatctaaaaggcaatgatattaagaagatgccaaaacagatcaggaatctaaacgatcttcaa 804  T
Q  201 accttgactgat 212  Q
    ||  ||||||||    
T  805 acactgactgat 816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 13 - 178
Target Start/End: Original strand, 6574072 - 6574237
Alignment:
Q  13 agattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttta 112  Q
    |||||||||||||| || ||||||| |||||| ||| ||||||| | ||||||| | |||||| |||| ||||||||||| | ||||||||| |||||||    
T  6574072 agattaaaaggttgactaattccatatgtaagatgtgtaatttagagacactaacactggaaggctgtactgaattgaccgaactcccttcagattttta 6574171  T
Q  113 caaacttgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    |||||| | || |||||| ||||||||| | ||  |||||||||||||||||||||||||| ||||    
T  6574172 caaactcgacagtttacgtcatcttaatatgaatagcactgatattaagaagatgccaaagaagat 6574237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1643 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold1643
Description:

Target: scaffold1643; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 1438 - 1279
Alignment:
Q  19 aaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatatttttacaaact 118  Q
    ||||||||||||| || ||||||||| |||| || ||| | ||||| ||||||||| | |||| | | ||||| |  ||||||||| | |||||||||||    
T  1438 aaaggttgcctgactcaatttgtaagctgtacaaattagagacactgatattggaacattgttataagttgactatactcccttcaaaattttacaaact 1339  T
Q  119 tgccaatttacgccatcttaatctaaaaggcactgatattaagaagatgccaaagcagat 178  Q
    ||  | |||||||||||||||||| ||||||  | |||| ||||| ||||||||||||||    
T  1338 tgtgagtttacgccatcttaatcttaaaggctgtaatataaagaaaatgccaaagcagat 1279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 137
Target Start/End: Original strand, 8254 - 8378
Alignment:
Q  13 agattaaaaggttgcctgattccatttgtaagttgtataatttacaaacactaatattggaagactgttctgaattgaccaagctcccttcatattttta 112  Q
    |||||| ||| || |||||| ||||||||| |||||||||||||||||||||  | ||  |||  |||  | |||||||  ||||||||||| ||||||     
T  8254 agattagaagcttacctgataccatttgtatgttgtataatttacaaacactcttgttaaaaggttgtcgtcaattgactgagctcccttcaaatttttc 8353  T
Q  113 caaacttgccaatttacgccatctt 137  Q
    ||||||   ||||||||| ||||||    
T  8354 caaactcatcaatttacgtcatctt 8378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University