View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_2 (Length: 492)

Name: NF18459_low_2
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_2
NF18459_low_2
[»] chr4 (1 HSPs)
chr4 (1-477)||(13615411-13615887)
[»] chr5 (10 HSPs)
chr5 (185-477)||(17981494-17981785)
chr5 (1-119)||(17982083-17982201)
chr5 (50-119)||(4380823-4380892)
chr5 (97-169)||(30205625-30205697)
chr5 (50-119)||(30339394-30339463)
chr5 (50-177)||(30059464-30059591)
chr5 (323-434)||(30202743-30202854)
chr5 (50-115)||(29871355-29871420)
chr5 (50-119)||(30243241-30243310)
chr5 (50-115)||(30399234-30399299)
[»] chr1 (4 HSPs)
chr1 (230-444)||(7097998-7098212)
chr1 (185-477)||(7582989-7583280)
chr1 (1-177)||(7582548-7582724)
chr1 (1-110)||(7098589-7098698)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Complemental strand, 13615887 - 13615411
Alignment:
Q  1 cttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  13615887 cttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttgaatgaggatgaatttgaaaatggtgtggagatgagaattt 13615788  T
Q  101 tcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatgataatctttcaacctagctttgg 200  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||    
T  13615787 tcccatctctggaggaactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatgagaatctttcaacttagctttgg 13615688  T
Q  201 agcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatggtgattaatcattgtcg 300  Q
    ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  13615687 agcatcttaatatccggatttgccacgaacttgagtatttaccagagaaattatggggaggtcggcaatcacttcaatctatggtgattaatcattgtcg 13615588  T
Q  301 taaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaaggaggga 400  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  13615587 taaattaaaatgcctgtcggacggtattagacacctcattgcacttgattcgttgaatatttttggatgcccaacattgaagaagcgatgcaaggaggga 13615488  T
Q  401 agatgggaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttg 477  Q
    | |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13615487 acatgggaagactgggacaagatagcgcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttg 13615411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 185 - 477
Target Start/End: Complemental strand, 17981785 - 17981494
Alignment:
Q  185 ttcaacctagctttggagcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatgg 284  Q
    ||||||||||||||| |||||||  |||||    | |||| ||| ||||||||||||| ||||||| ||||||||||||  |||||||||||||||||||    
T  17981785 ttcaacctagctttgaagcatctggatatcaatttgtgcagcgagcttgagtatttaccagagaaaatatggggaggtctgcaatcacttcaatctatgg 17981686  T
Q  285 tgattaatcattgtcgtaaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaa 384  Q
    |||||  | ||||| | ||||| |||||| || ||||||||||||||||||| | | |||||||||| || | |||   || ||||||| ||||| ||||    
T  17981685 tgattgttgattgtaggaaattgaaatgcttgccggacggtattagacaccttactgcacttgattcattaactattcgtgcatgcccaacattggagaa 17981586  T
Q  385 gcgatgcaaggagggaagatgggaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttg 477  Q
    ||||||||| |||||||   | |||||| ||||||||||||  ||||||||| ||||  ||||||  ||||||| | ||||||||||||||||    
T  17981585 gcgatgcaatgagggaaccggagaagactgggacaagatagcccatattccagaactgcacattccttagaatg-agaaagcagagatgtttg 17981494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 17982201 - 17982083
Alignment:
Q  1 cttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattt 100  Q
    |||||||||||||||||||||||| ||||  |  ||| ||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| || ||    
T  17982201 cttggtaaactaccatctctaaaaaaacttgaactattcaatgtgtctgtgaaatacttggatgatgatgaatttgaaaatggtgtggagatgataaatt 17982102  T
Q  101 tcccatctctggaggtact 119  Q
    |||||||||||||| ||||    
T  17982101 tcccatctctggagatact 17982083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 50 - 119
Target Start/End: Complemental strand, 4380892 - 4380823
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 119  Q
    ||||| |||||||||| |||||||||||  ||||| ||||| ||||  ||||||||||||||||||||||    
T  4380892 tgaaatacttggatgatgatgaatttgaggatggtatggaggtgagggttttcccatctctggaggtact 4380823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 30205697 - 30205625
Alignment:
Q  97 attttcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagag 169  Q
    ||||||||||||||||||||||| ||| |||||  | |||||||||||||  |||| || |||||||||||||    
T  30205697 attttcccatctctggaggtactcatattagaaatcctaccaaacttagaagggttattgaaagtggaaagag 30205625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 30339394 - 30339463
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 119  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  ||||||||||||||||||||||    
T  30339394 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggtact 30339463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 177
Target Start/End: Complemental strand, 30059591 - 30059464
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtactaataatagaagacttaccaaacttagatag 149  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  |||||||||||||||||| |||  || || |  | ||||||||| ||||  |    
T  30059591 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctggaggaactcgtattatatcagttaccaaacatagaggg 30059492  T
Q  150 gttgttaaaagtggaaagagaggagatg 177  Q
     || || ||||||||||||| |||||||    
T  30059491 tttattgaaagtggaaagaggggagatg 30059464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 434
Target Start/End: Complemental strand, 30202854 - 30202743
Alignment:
Q  323 ggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaaggagggaagatgggaagaccgggacaaga 422  Q
    |||||||||||||||| | ||||||||| | |||  || || || ||||||  ||||||| | |||||||||||||||| | ||||  || |||||||||    
T  30202854 ggtattagacacctcacttcacttgatttgctgacaattttcggttgcccaatattgaaggaacgatgcaaggagggaacaggggagaactgggacaaga 30202755  T
Q  423 tagagcatattc 434  Q
    |||  |||||||    
T  30202754 tagcacatattc 30202743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 29871420 - 29871355
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggagg 115  Q
    ||||| |||||||||| ||||||| | |  ||||| ||||| |||| |||||||||||||||||||    
T  29871420 tgaaatacttggatgatgatgaatctcaggatggtatggaggtgaggattttcccatctctggagg 29871355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 119
Target Start/End: Original strand, 30243241 - 30243310
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggaggtact 119  Q
    ||||| |||||||||| ||||||| |||  ||||| ||||| ||||  ||||||||||||| ||||||||    
T  30243241 tgaaatacttggatgatgatgaatctgaggatggtatggaggtgagggttttcccatctctagaggtact 30243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 30399299 - 30399234
Alignment:
Q  50 tgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattttcccatctctggagg 115  Q
    ||||| |||||||||| ||||||| | |  ||||||||||| ||||  ||||||||||||||||||    
T  30399299 tgaaatacttggatgatgatgaatctcaggatggtgtggaggtgagggttttcccatctctggagg 30399234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 7e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 230 - 444
Target Start/End: Complemental strand, 7098212 - 7097998
Alignment:
Q  230 cttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatggtgattaatcattgtcgtaaattaaaatgcctgtcggacggtatta 329  Q
    ||||||||||||| ||||||| ||||||||||||  ||||||||||||||||||  ||||  | |||||   | |||||||||| || | || |||||||    
T  7098212 cttgagtatttaccagagaaaatatggggaggtctgcaatcacttcaatctatgaggatttcttattgtgaaagattaaaatgcttgccagatggtatta 7098113  T
Q  330 gacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaagcgatgcaaggagggaagatgggaagaccgggacaagatagagca 429  Q
    |||||||||   ||||||||||||||| |||  ||||||||||| |||||| | |||||||||||||||||| | |||||||| ||||||||||||  ||    
T  7098112 gacacctcaccgcacttgattcgttgactattgttggatgcccaacattgacggagcgatgcaaggagggaacaggggaagactgggacaagatagccca 7098013  T
Q  430 tattccaaaactaaa 444  Q
    |||||||||||||||    
T  7098012 tattccaaaactaaa 7097998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 185 - 477
Target Start/End: Original strand, 7582989 - 7583280
Alignment:
Q  185 ttcaacctagctttggagcatcttaatatccggatttgcaacgaacttgagtatttactagagaaattatggggaggtcgacaatcacttcaatctatgg 284  Q
    |||||||||| |||||||||||| ||||||    ||||| | || ||||||||||||| ||||||| |||||||||||   |||||||| ||||| |||     
T  7582989 ttcaacctagttttggagcatctgaatatcgctttttgcgatgagcttgagtatttaccagagaaaatatggggaggtttgcaatcactacaatccatga 7583088  T
Q  285 tgattaatcattgtcgtaaattaaaatgcctgtcggacggtattagacacctcattccacttgattcgttgaatatatttggatgcccagcattgaagaa 384  Q
     |||| ||  ||||   |||||||||||| || | || |||||||||||||||| | ||||||||| |||||||||   ||||||||||  ||||| | |    
T  7583089 ggatttattgttgtaaaaaattaaaatgcttgccagatggtattagacacctcactgcacttgatttgttgaatattgctggatgcccaatattgacgga 7583188  T
Q  385 gcgatgcaaggagggaagatgggaagaccgggacaagatagagcatattccaaaactaaacattcgatagaatgaaaaaagcagagatgtttg 477  Q
    || ||||||| |||||| | |||||||| || ||||||||| ||||||| |||||||  ||||| | ||||||| || |||||||||||||||    
T  7583189 gctatgcaagaagggaacaggggaagactggaacaagatagcgcatatttcaaaacttgacattagttagaatg-aagaagcagagatgtttg 7583280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 7582548 - 7582724
Alignment:
Q  1 cttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattt 100  Q
    ||||||||||||||||||||||||  ||| ||  || ||   |||||||||||| |||||||||| ||||||||| | |||||| ||||  |||||||||    
T  7582548 cttggtaaactaccatctctaaaaacacttcaaataaccttggtgtctgtgaaatacttggatgatgatgaatttcacaatggtttggaagtgagaattt 7582647  T
Q  101 tcccatctctggaggtactaataatagaagacttaccaaacttagataggttgttaaaagtggaaagagaggagatg 177  Q
    |||||||||| |||||||| ||||| || |||||||||||||||||  ||||||| |||||||||| | ||||||||    
T  7582648 tcccatctcttgaggtacttataattgatgacttaccaaacttagaggggttgttgaaagtggaaaaaaaggagatg 7582724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7098698 - 7098589
Alignment:
Q  1 cttggtaaactaccatctctaaaagaactccatttatccaaagtgtctgtgaaacacttggatgaggatgaatttgaaaatggtgtggagatgagaattt 100  Q
    |||||||||||||||| ||||||| |||||   |||| |   |||||||||||| ||||||||||  |||||||| | |||||| ||||| | || ||||    
T  7098698 cttggtaaactaccatatctaaaaaaactcatattattcggtgtgtctgtgaaatacttggatgataatgaatttcacaatggtatggaggtaaggattt 7098599  T
Q  101 tcccatctct 110  Q
    ||||||||||    
T  7098598 tcccatctct 7098589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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