View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_low_3 (Length: 431)
Name: NF18459_low_3
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_low_3 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 15 - 431
Target Start/End: Complemental strand, 2391930 - 2391514
Alignment:
| Q |
15 |
caaaggcaagacgagaatcccctctacaattccttttgggtaaagtttacaaaaatcaaacccttgccactaatttacaaggcgaaggggatgggtggag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
2391930 |
caaaggcaagacgagaatcccctctacaattccttttgagtaaagtttacaaaaatcaaacccttgccactgatttacaaggcgaaggggatgggcggag |
2391831 |
T |
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| Q |
115 |
gctgaacgagtggcatctttgacatggtcccattgttagtcagcatatttggcgccacactgtcctccgtgacaacagggttcacttgcatgactctctc |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2391830 |
gctgaacgagtggcatctttgacatggtcccattgttagtcagcatatttggcgccacactgtcctctgtgacaacagggttcacttgcatgactctctc |
2391731 |
T |
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| Q |
215 |
aggtatgactttatcaccatcaactttagccagcacctcaaaatgcaacctcacagtgtcaggcttagtcctccattcagggaatccctcaaaactaatc |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
2391730 |
aggtatgactttatcaccatcaactttagccagcacctcaaaatgcaacctcacagtgtcaggcttagtcctccattcagggaaaccctcaaaactaatc |
2391631 |
T |
|
| Q |
315 |
ccatctccttctttcagctccttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacctgaaggaacctttttcat |
414 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391630 |
ccatctccttctttcagcttcttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacctgaaggaacctttttcat |
2391531 |
T |
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| Q |
415 |
tcgccttaggacccaac |
431 |
Q |
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| T |
2391530 |
tcgccttaggacccaac |
2391514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 15 - 429
Target Start/End: Original strand, 56189332 - 56189743
Alignment:
| Q |
15 |
caaaggcaagacgagaatcccctctacaattccttttgggtaaagtttacaaaaatcaaacccttgccactaatttacaaggcgaaggggatgggtggag |
114 |
Q |
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||||||||| | ||||||| ||||||||||||||| | ||||||| ||||||||||||||| || ||||||||| ||||||||||||||||||| |||| |
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| T |
56189332 |
caaaggcaaaccaagaatccactctacaattccttt-gtgtaaagtatacaaaaatcaaacctttcccactaatt-acaaggcgaaggggatgggcggag |
56189429 |
T |
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| Q |
115 |
gctgaacgagtggcatctttgacatggtcccattgttagtcagcatatttggcgccacactgtcctccgtgacaacagggttcacttgcatgactctctc |
214 |
Q |
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| T |
56189430 |
gctgaacaatagacat-tttgacatggtcccattgttagttagcacacttaacgccacagtgtcctccacaaaaacagggttcacttgcacgactctctc |
56189528 |
T |
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| Q |
215 |
aggtatgactttatcaccatcaactttagccagcacctcaaaatgcaacctcacagtgtcaggcttagtcctccattcagggaatccctcaaaactaatc |
314 |
Q |
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||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||| |||||||| |||||||||| ||||| ||||||||||||| |
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| T |
56189529 |
aggtatgactttatcaccatccacttttgccagcacctcaaattgcaatctcacagtctcaggcttggtcctccatttggggaaaccctcaaaactaaca |
56189628 |
T |
|
| Q |
315 |
ccatctccttctttcagctccttctcagcttggaatcctatcttcacaaaagtctgagcagaaacatcagccttcaacaacctgaaggaacctttttcat |
414 |
Q |
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||||||||||| |||| || |||||||||||| || |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| | |
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| T |
56189629 |
ccatctccttccttcaacttcttctcagcttgaaagcctatctttacaaaagtctgagcagaaacatctgccttcaacaacctaaaggaacctttttcct |
56189728 |
T |
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| Q |
415 |
tcgccttaggaccca |
429 |
Q |
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| T |
56189729 |
tagccttagggccca |
56189743 |
T |
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