View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_4 (Length: 392)

Name: NF18459_low_4
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_4
NF18459_low_4
[»] chr6 (12 HSPs)
chr6 (18-375)||(31200997-31201354)
chr6 (18-375)||(31189190-31189547)
chr6 (18-375)||(31145132-31145489)
chr6 (20-375)||(31171447-31171802)
chr6 (30-375)||(31224602-31224947)
chr6 (30-375)||(30961097-30961442)
chr6 (30-375)||(30992579-30992924)
chr6 (42-375)||(31229882-31230215)
chr6 (42-375)||(31214333-31214663)
chr6 (18-363)||(30955364-30955706)
chr6 (18-147)||(30945317-30945446)
chr6 (283-363)||(30945104-30945184)
[»] chr8 (2 HSPs)
chr8 (47-111)||(44036041-44036105)
chr8 (257-321)||(44035822-44035886)
[»] chr1 (7 HSPs)
chr1 (273-315)||(10906997-10907039)
chr1 (273-315)||(10930880-10930922)
chr1 (273-315)||(10993084-10993126)
chr1 (263-312)||(9125105-9125154)
chr1 (273-306)||(11041252-11041285)
chr1 (251-312)||(49725337-49725398)
chr1 (260-312)||(8861524-8861576)
[»] chr4 (1 HSPs)
chr4 (256-312)||(27696365-27696421)


Alignment Details
Target: chr6 (Bit Score: 346; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 31200997 - 31201354
Alignment:
Q  18 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31200997 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 31201096  T
Q  118 tgtcattctccttgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaag 217  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201097 tgtcattctccttgcaatcttgtcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaag 31201196  T
Q  218 tatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatg 317  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201197 tatatctcacttgtgagacttgcatcagcattaatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatg 31201296  T
Q  318 aaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31201297 aaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 31201354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 31189190 - 31189547
Alignment:
Q  18 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31189190 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 31189289  T
Q  118 tgtcattctccttgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaag 217  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||    
T  31189290 tgtcattctccttgcaatctcgtcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaag 31189389  T
Q  218 tatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatg 317  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| ||    
T  31189390 tatatctcactagtgtgacttgcatcagcaataatgtttttcctcccaccaaccatttccagcaacatcattccataactataaacatcagatttgtgtg 31189489  T
Q  318 aaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  31189490 aaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctct 31189547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 18 - 375
Target Start/End: Original strand, 31145132 - 31145489
Alignment:
Q  18 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 117  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31145132 gtatttcaagtgaattcatgttaacttctaacatttcaataactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 31145231  T
Q  118 tgtcattctccttgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaag 217  Q
     ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||    
T  31145232 agtcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaag 31145331  T
Q  218 tatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatg 317  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||    
T  31145332 tatatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtg 31145431  T
Q  318 aaactcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  31145432 aaactcctccaaaatgtctattccacacttctggagctacatatcccattgtccctct 31145489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 20 - 375
Target Start/End: Original strand, 31171447 - 31171802
Alignment:
Q  20 atttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattg 119  Q
    ||||| ||| |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31171447 atttccagtgaattcattgtaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaatag 31171546  T
Q  120 tcattctccttgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagta 219  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||||| ||||||||||||||||| || ||||||||    
T  31171547 tcattctccttgcaatctcatcttcttctgtatccataaccccatcaggtctcagattagtgccaagctctagcctattgtatacccaatgtggaaagta 31171646  T
Q  220 tatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaa 319  Q
    ||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||| ||||    
T  31171647 tatctcactagtgtgacttgcatcagcaatgatgtttttcctccctccaaccatttctagcaacatcattccataactataaacatcagatttgtgtgaa 31171746  T
Q  320 actcctccaaaatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  31171747 actcctccaaaatgtctattccacacttctggagctacatatcccattgtccctct 31171802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 31224947 - 31224602
Alignment:
Q  30 aattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctcct 129  Q
    |||||||| |||| |||||||||||||||||||||||||||||||| |||||| | ||||| |||||||| ||||| ||||| ||||| |||||||||||    
T  31224947 aattcatgctaacatctaacatttcaatcactttactcattgtaggcctatcattaggaaacgtttgaatacaccacaaacctacaatggtcattctcct 31224848  T
Q  130 tgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcactt 229  Q
    |||||||| |||||||||||||||||| | |||||||||||| |||| |||| ||||||||||||| ||||||||||| |||||||| ||||||||||||    
T  31224847 tgcaatcttatcttcttctgtatccattattccatcaggtctaaaatcactagcaagctcaagccttttgtatacccaatgaggaaaatatatctcactt 31224748  T
Q  230 gtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaa 329  Q
    ||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||||||    
T  31224747 gtgcgacttgcatcagcattaatgtttttcctccctccaaccatttccagcaatatcattccataactataaacatcagacttgtgtgaaactcctccaa 31224648  T
Q  330 aatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||| ||||||||||||||| ||||| || |||||    
T  31224647 aatgtctattccacacttctggagctacataccccattgttcctct 31224602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 30961442 - 30961097
Alignment:
Q  30 aattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctcct 129  Q
    |||||||||||||||||||||||||||  ||||||||||||||||| ||  || | |||||||||||||| ||||| ||||||||||| ||||||||| |    
T  30961442 aattcatgttaacttctaacatttcaactactttactcattgtaggcctgccattaggaaatgtttgaatacaccacaaacccacaatggtcattctctt 30961343  T
Q  130 tgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcactt 229  Q
    ||||||||||| ||||||||||||  | || |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30961342 tgcaatctcattttcttctgtatcagttaccccatcaggtctcaaatcactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcactt 30961243  T
Q  230 gtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaa 329  Q
    ||| |||||||||| ||| |||| |||||||  || || |||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  30961242 gtgtgacttgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaa 30961143  T
Q  330 aatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||| ||| ||||||||||| ||||| ||||||||    
T  30961142 aatgtctattccacacttcaggagctacataccccattgtccctct 30961097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 30 - 375
Target Start/End: Complemental strand, 30992924 - 30992579
Alignment:
Q  30 aattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctcct 129  Q
    |||| |||| |||||||||||||||||  ||||||||||||||||||||  || | |||||||||||||| ||||| |||| |||||| ||||| ||| |    
T  30992924 aattaatgtcaacttctaacatttcaactactttactcattgtaggtctgccattaggaaatgtttgaatacaccacaaactcacaatggtcatcctctt 30992825  T
Q  130 tgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcactt 229  Q
    |||||||||||||||||| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  30992824 tgcaatctcatcttcttccgtatccattaccccatcaggtctcaaataactaccaagttcaagcctattgtatacccaatgaggaaagtatatctcactt 30992725  T
Q  230 gtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaa 329  Q
    ||| |||||||||| ||| |||| |||||||  || || |||||||| | ||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  30992724 gtgtgacttgcatccgcattaatatttttccgtccacccaccatttctaacaacatcattccataactataaacatcagacttgtgtgaaactcctccaa 30992625  T
Q  330 aatgtctattccacatttctggagctacatatcccatagtccctct 375  Q
    ||||||||||||||| ||||||||||||||| ||||| ||||||||    
T  30992624 aatgtctattccacacttctggagctacataccccattgtccctct 30992579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 42 - 375
Target Start/End: Complemental strand, 31230215 - 31229882
Alignment:
Q  42 cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcatc 141  Q
    |||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||| ||||| |||| |||||||||||| |||||    
T  31230215 cttctaacatttcaatcactctactcattgttggtctatcatttggaaatgtttgaatgcaccataaacctacaatggtcaatctccttgcaatttcatc 31230116  T
Q  142 ttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgca 241  Q
    |||||| |   | || ||| | || |||||||||| | | |  || |||||  | ||||||||||| |||||||||||||||||||||||  ||||||||    
T  31230115 ttcttccgagacaatcacttcgtccggtctcaaatcattgcgtagatcaagattcttgtatacccaatgaggaaagtatatctcacttgtttgacttgca 31230016  T
Q  242 tcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattcc 341  Q
    || ||  |||||||||||||||| ||||||||||| |||||||||||||||||||||||||| || |||||||  ||||||| |||||||| | ||||||    
T  31230015 tcggcgttaatgtttttcctcccaccaaccatttctagcaacatcattccataactataaacgtcagacttgtgcgaaactcatccaaaatttatattcc 31229916  T
Q  342 acatttctggagctacatatcccatagtccctct 375  Q
    | |  || ||||||||||| ||||| ||||||||    
T  31229915 ataactcaggagctacataccccattgtccctct 31229882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 42 - 375
Target Start/End: Complemental strand, 31214663 - 31214333
Alignment:
Q  42 cttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaattgtcattctccttgcaatctcatc 141  Q
    |||||||||||||||| ||| ||||||||| |||||||||| |||||| |||||||||||||||||| || || || ||||||||| |||| || |||||    
T  31214663 cttctaacatttcaataactctactcattgcaggtctatcatttggaagtgtttgaatgcaccataatcctactatggtcattctctttgcgatgtcatc 31214564  T
Q  142 ttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaagtatatctcacttgtgagacttgca 241  Q
     |||   ||  | || ||| ||||  ||||||||| | |  | || |||| ||| ||||||||||| | |||||||||| ||||||||||  ||||||||    
T  31214563 atct---gtggcaatcacttcatcgtgtctcaaatcagtgtctagatcaaaccttttgtatacccaatcaggaaagtatttctcacttgtatgacttgca 31214467  T
Q  242 tcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattcc 341  Q
    |  ||| ||||||||||||| ||||| |  ||||||| |||||||||||| |||||||||||||| |||||||| ||||| |||||||| | ||||||||    
T  31214466 ttggcactaatgtttttccttcctccgattatttccaacaacatcattccgtaactataaacatcagacttgtacgaaacgcctccaaagtttctattcc 31214367  T
Q  342 acatttctggagctacatatcccatagtccctct 375  Q
    |||  || ||||||||||||||||| || |||||    
T  31214366 acaactcaggagctacatatcccatcgttcctct 31214333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 30955706 - 30955364
Alignment:
Q  18 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 117  Q
    |||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||| |||||    
T  30955706 gtatttcaaggacattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaat 30955607  T
Q  118 tgtcattctccttgcaatctcatcttcttctgtatccataactccatcaggtctcaaattactaccaagctcaagcctattgtatacccagtgaggaaag 217  Q
     |||||||   |||||||||||| ||||||  |  |||| |||   ||||||||||||| |||  |    || ||| ||||||||| ||| |  |||||     
T  30955606 ggtcattccttttgcaatctcattttcttcaatggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaa 30955507  T
Q  218 tatatctcacttgtgagacttgcatcagcaataatgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatg 317  Q
    ||   ||| || ||  || ||| || | ||  ||| || || ||| |||||||||| || |  | |||||||||||||||||||||||| ||||||| ||    
T  30955506 ta---ctcgctagtttgatttgtattaacatcaatattgtttctcactccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtg 30955410  T
Q  318 aaactcctccaaaatgtctattccacatttctggagctacatatcc 363  Q
    ||||||||||||| ||||||||||| | ||||||||||||||||||    
T  30955409 aaactcctccaaattgtctattccatacttctggagctacatatcc 30955364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 30945446 - 30945317
Alignment:
Q  18 gtatttcaagtaaattcatgttaacttctaacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacccacaat 117  Q
    |||||||||| | ||||||| || |||| ||||||||||||||| |||||||||| |||| |||| |||| ||||||||||||||||||||||| |||||    
T  30945446 gtatttcaaggatattcatgctaccttccaacatttcaatcactctactcattgttggtcgatcatttggcaatgtttgaatgcaccataaaccaacaat 30945347  T
Q  118 tgtcattctccttgcaatctcatcttcttc 147  Q
     |||||||   |||||||||||| ||||||    
T  30945346 agtcattccttttgcaatctcattttcttc 30945317  T

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Target: chr6; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 283 - 363
Target Start/End: Complemental strand, 30945184 - 30945104
Alignment:
Q  283 catcattccataactataaacatcggacttgtatgaaactcctccaaaatgtctattccacatttctggagctacatatcc 363  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||| | ||||||||||||||||||    
T  30945184 catcattccataactataaacatcagacttgtgtgaaactcctccaaattgtctattccatacttctggagctacatatcc 30945104  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 47 - 111
Target Start/End: Complemental strand, 44036105 - 44036041
Alignment:
Q  47 aacatttcaatcactttactcattgtaggtctatcacttggaaatgtttgaatgcaccataaacc 111  Q
    ||||| |||||||||||||| ||||||||||||| | | |||| ||||||||||||||| |||||    
T  44036105 aacatatcaatcactttacttattgtaggtctatgagtaggaattgtttgaatgcaccacaaacc 44036041  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Complemental strand, 44035886 - 44035822
Alignment:
Q  257 ttcctccctccaaccatttccagcaacatcattccataactataaacatcggacttgtatgaaac 321  Q
    |||| ||| ||||||||||| |||||||||||||| |||||||| ||||| ||||| | ||||||    
T  44035886 ttccgcccaccaaccatttctagcaacatcattccgtaactatagacatcagacttatgtgaaac 44035822  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 10907039 - 10906997
Alignment:
Q  273 tttccagcaacatcattccataactataaacatcggacttgta 315  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10907039 tttcaagcaacatcattccataactataaacatctgatttgta 10906997  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 10930922 - 10930880
Alignment:
Q  273 tttccagcaacatcattccataactataaacatcggacttgta 315  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10930922 tttcaagcaacatcattccataactataaacatctgatttgta 10930880  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 315
Target Start/End: Complemental strand, 10993126 - 10993084
Alignment:
Q  273 tttccagcaacatcattccataactataaacatcggacttgta 315  Q
    |||| ||||||||||||||||||||||||||||| || |||||    
T  10993126 tttcaagcaacatcattccataactataaacatctgatttgta 10993084  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 9125105 - 9125154
Alignment:
Q  263 cctccaaccatttccagcaacatcattccataactataaacatcggactt 312  Q
    |||||||||| ||||||||||| ||| ||||||||||||| ||| |||||    
T  9125105 cctccaaccaattccagcaacaacatcccataactataaatatcagactt 9125154  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 306
Target Start/End: Complemental strand, 11041285 - 11041252
Alignment:
Q  273 tttccagcaacatcattccataactataaacatc 306  Q
    |||| |||||||||||||||||||||||||||||    
T  11041285 tttcaagcaacatcattccataactataaacatc 11041252  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 312
Target Start/End: Complemental strand, 49725398 - 49725337
Alignment:
Q  251 atgtttttcctccctccaaccatttccagcaacatcattccataactataaacatcggactt 312  Q
    |||||||| ||||  |||||||||||||  | ||||||||||||||| |||||||| |||||    
T  49725398 atgttttttctcctcccaaccatttccatgaccatcattccataactgtaaacatctgactt 49725337  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 312
Target Start/End: Original strand, 8861524 - 8861576
Alignment:
Q  260 ctccctccaaccatttccagcaacatcattccataactataaacatcggactt 312  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||| ||| |||||    
T  8861524 ctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgactt 8861576  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 312
Target Start/End: Complemental strand, 27696421 - 27696365
Alignment:
Q  256 tttcctccctccaaccatttccagcaacatcattccataactataaacatcggactt 312  Q
    |||||| |||||||||||||| || | || ||| ||||||||||||||||| |||||    
T  27696421 tttccttcctccaaccatttcaagaagcagcatcccataactataaacatctgactt 27696365  T

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