View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_5 (Length: 368)

Name: NF18459_low_5
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_5
NF18459_low_5
[»] chr6 (15 HSPs)
chr6 (20-363)||(32598747-32599090)
chr6 (24-154)||(34905378-34905508)
chr6 (24-168)||(12753754-12753898)
chr6 (63-154)||(32112725-32112816)
chr6 (48-154)||(10133166-10133272)
chr6 (24-129)||(31116157-31116262)
chr6 (48-154)||(16851981-16852087)
chr6 (48-129)||(445884-445965)
chr6 (21-169)||(19090207-19090356)
chr6 (63-163)||(16436145-16436245)
chr6 (48-148)||(21987358-21987458)
chr6 (48-115)||(12780806-12780873)
chr6 (77-148)||(17144685-17144756)
chr6 (48-154)||(5106364-5106470)
chr6 (110-164)||(12794811-12794865)
[»] chr3 (34 HSPs)
chr3 (19-129)||(55452048-55452158)
chr3 (18-163)||(41451894-41452039)
chr3 (18-163)||(24734741-24734886)
chr3 (24-129)||(46450107-46450213)
chr3 (48-129)||(18427183-18427264)
chr3 (48-152)||(20791362-20791466)
chr3 (24-163)||(28529295-28529432)
chr3 (59-129)||(46161024-46161094)
chr3 (61-149)||(48351515-48351603)
chr3 (48-163)||(52123955-52124070)
chr3 (51-129)||(752461-752539)
chr3 (48-154)||(20493453-20493559)
chr3 (32-145)||(2419481-2419594)
chr3 (48-129)||(19345033-19345114)
chr3 (49-154)||(38138590-38138695)
chr3 (50-154)||(14236087-14236191)
chr3 (60-163)||(29588732-29588835)
chr3 (51-129)||(742025-742103)
chr3 (96-133)||(138877-138914)
chr3 (24-168)||(5452056-5452198)
chr3 (48-133)||(10948589-10948674)
chr3 (61-154)||(29755579-29755672)
chr3 (48-129)||(37776736-37776817)
chr3 (48-148)||(38414713-38414813)
chr3 (48-120)||(39186030-39186102)
chr3 (83-154)||(2009095-2009166)
chr3 (51-169)||(27243114-27243233)
chr3 (83-129)||(24429058-24429104)
chr3 (83-129)||(43016514-43016560)
chr3 (50-159)||(8824982-8825091)
chr3 (77-125)||(22856271-22856319)
chr3 (77-121)||(29388635-29388679)
chr3 (77-133)||(41607506-41607562)
chr3 (48-167)||(54140887-54141007)
[»] scaffold0018 (1 HSPs)
scaffold0018 (32-154)||(27862-27984)
[»] chr8 (19 HSPs)
chr8 (24-163)||(1977172-1977311)
chr8 (32-154)||(36804847-36804969)
chr8 (77-154)||(6098785-6098862)
chr8 (50-163)||(16983462-16983575)
chr8 (48-154)||(8903918-8904024)
chr8 (48-152)||(23685197-23685297)
chr8 (24-154)||(5979922-5980051)
chr8 (48-154)||(24055933-24056039)
chr8 (59-129)||(7493375-7493446)
chr8 (50-129)||(17499266-17499345)
chr8 (24-115)||(32072139-32072230)
chr8 (48-121)||(8914837-8914910)
chr8 (96-169)||(5095753-5095826)
chr8 (48-129)||(28413902-28413983)
chr8 (48-129)||(43506601-43506682)
chr8 (48-120)||(45246500-45246572)
chr8 (48-154)||(1205893-1206000)
chr8 (24-154)||(31301157-31301286)
chr8 (51-160)||(9952760-9952868)
[»] chr4 (38 HSPs)
chr4 (24-120)||(20225383-20225479)
chr4 (48-154)||(39471223-39471329)
chr4 (32-169)||(24834628-24834765)
chr4 (24-163)||(43771168-43771307)
chr4 (50-154)||(49242238-49242342)
chr4 (50-169)||(49077317-49077436)
chr4 (25-155)||(41153205-41153335)
chr4 (27-129)||(45081775-45081877)
chr4 (75-152)||(37451023-37451100)
chr4 (60-154)||(20454616-20454710)
chr4 (24-154)||(34129408-34129538)
chr4 (48-168)||(13070006-13070127)
chr4 (82-163)||(38537512-38537593)
chr4 (48-163)||(50164461-50164576)
chr4 (48-154)||(19937180-19937286)
chr4 (49-154)||(722224-722329)
chr4 (49-154)||(754588-754693)
chr4 (83-164)||(19933474-19933555)
chr4 (48-168)||(8109022-8109142)
chr4 (24-147)||(24938430-24938553)
chr4 (50-129)||(45310981-45311060)
chr4 (18-169)||(52671866-52672016)
chr4 (96-168)||(18421825-18421897)
chr4 (48-151)||(25719123-25719227)
chr4 (62-154)||(47009269-47009361)
chr4 (48-154)||(19447197-19447304)
chr4 (48-163)||(26361307-26361422)
chr4 (48-121)||(16178649-16178723)
chr4 (75-161)||(40991590-40991676)
chr4 (75-117)||(54543431-54543473)
chr4 (49-154)||(22542448-22542553)
chr4 (110-167)||(41278744-41278801)
chr4 (48-121)||(48339381-48339454)
chr4 (24-121)||(50481586-50481683)
chr4 (75-115)||(4138958-4138998)
chr4 (24-84)||(22592346-22592406)
chr4 (77-121)||(31250924-31250968)
chr4 (84-140)||(48796378-48796434)
[»] chr2 (30 HSPs)
chr2 (48-167)||(44274300-44274419)
chr2 (48-154)||(12989257-12989363)
chr2 (32-154)||(34142147-34142269)
chr2 (48-129)||(10981584-10981665)
chr2 (32-148)||(25730453-25730569)
chr2 (67-154)||(25238285-25238372)
chr2 (48-163)||(26767760-26767875)
chr2 (24-121)||(9470123-9470220)
chr2 (50-121)||(7919311-7919382)
chr2 (60-151)||(38464241-38464332)
chr2 (48-169)||(42182955-42183077)
chr2 (83-151)||(14489550-14489618)
chr2 (77-172)||(19953490-19953586)
chr2 (59-154)||(6980128-6980223)
chr2 (60-154)||(11539503-11539598)
chr2 (63-149)||(30718340-30718426)
chr2 (84-154)||(45554661-45554731)
chr2 (48-117)||(37652290-37652359)
chr2 (48-167)||(15508980-15509100)
chr2 (75-154)||(2122888-2122967)
chr2 (76-154)||(4552848-4552926)
chr2 (49-133)||(12098895-12098980)
chr2 (48-164)||(28898034-28898151)
chr2 (61-169)||(472156-472264)
chr2 (100-168)||(15508910-15508978)
chr2 (51-115)||(15884498-15884562)
chr2 (97-129)||(27494484-27494516)
chr2 (59-163)||(32856134-32856238)
chr2 (95-163)||(35316400-35316468)
chr2 (77-129)||(36471871-36471923)
[»] chr7 (23 HSPs)
chr7 (24-130)||(33008146-33008252)
chr7 (18-154)||(48374447-48374583)
chr7 (48-163)||(6442231-6442346)
chr7 (48-167)||(27888348-27888467)
chr7 (24-154)||(22189981-22190111)
chr7 (48-154)||(44350810-44350916)
chr7 (76-140)||(1316367-1316431)
chr7 (24-121)||(31502505-31502602)
chr7 (59-163)||(25686834-25686938)
chr7 (24-154)||(11824113-11824241)
chr7 (48-163)||(46517357-46517472)
chr7 (24-154)||(11692221-11692351)
chr7 (23-129)||(12263469-12263575)
chr7 (82-163)||(27949373-27949454)
chr7 (27-91)||(17354598-17354662)
chr7 (75-127)||(19422869-19422921)
chr7 (48-163)||(25428477-25428593)
chr7 (59-154)||(39254160-39254255)
chr7 (24-154)||(32205118-32205248)
chr7 (75-163)||(2911854-2911943)
chr7 (48-121)||(23564076-23564149)
chr7 (61-154)||(32605410-32605503)
chr7 (89-133)||(7459450-7459494)
[»] chr1 (34 HSPs)
chr1 (88-167)||(16948524-16948603)
chr1 (48-167)||(30678906-30679025)
chr1 (21-154)||(15928594-15928725)
chr1 (49-169)||(8899081-8899201)
chr1 (48-152)||(22540434-22540534)
chr1 (48-154)||(26980270-26980376)
chr1 (50-167)||(25543408-25543524)
chr1 (76-133)||(37552978-37553035)
chr1 (77-151)||(15906505-15906579)
chr1 (59-149)||(41948159-41948249)
chr1 (21-158)||(2225263-2225400)
chr1 (48-167)||(14093995-14094115)
chr1 (63-154)||(8741231-8741322)
chr1 (48-151)||(19101612-19101715)
chr1 (48-159)||(32211787-32211898)
chr1 (83-154)||(39974208-39974279)
chr1 (50-120)||(3872676-3872746)
chr1 (48-151)||(15523276-15523375)
chr1 (48-151)||(15531270-15531369)
chr1 (50-163)||(6133624-6133736)
chr1 (48-169)||(11987692-11987813)
chr1 (61-150)||(15468299-15468388)
chr1 (82-170)||(28109967-28110056)
chr1 (48-129)||(41958149-41958230)
chr1 (27-107)||(24911508-24911588)
chr1 (48-140)||(33193116-33193208)
chr1 (59-169)||(10659762-10659871)
chr1 (83-129)||(12767361-12767407)
chr1 (48-146)||(33114037-33114135)
chr1 (24-129)||(28218081-28218186)
chr1 (63-120)||(47644339-47644396)
chr1 (95-167)||(931487-931559)
chr1 (48-108)||(1093127-1093187)
chr1 (61-113)||(49730943-49730995)
[»] chr5 (18 HSPs)
chr5 (24-129)||(5413770-5413875)
chr5 (47-163)||(28611777-28611893)
chr5 (63-154)||(4714830-4714921)
chr5 (48-163)||(34384690-34384805)
chr5 (23-133)||(41330422-41330532)
chr5 (49-154)||(28490730-28490835)
chr5 (48-153)||(30325883-30325988)
chr5 (48-121)||(43405459-43405532)
chr5 (75-163)||(17434849-17434936)
chr5 (50-154)||(25919279-25919383)
chr5 (51-121)||(28090270-28090340)
chr5 (48-121)||(10142017-10142090)
chr5 (48-121)||(34368426-34368499)
chr5 (63-154)||(28223784-28223875)
chr5 (48-154)||(1923560-1923666)
chr5 (61-151)||(13381791-13381881)
chr5 (48-121)||(27592493-27592566)
chr5 (77-117)||(36337935-36337975)
[»] scaffold0194 (1 HSPs)
scaffold0194 (84-154)||(8419-8489)
[»] scaffold0204 (1 HSPs)
scaffold0204 (48-121)||(26903-26976)


Alignment Details
Target: chr6 (Bit Score: 291; Significance: 1e-163; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 20 - 363
Target Start/End: Complemental strand, 32599090 - 32598747
Alignment:
Q  20 tacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaaga 119  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32599090 tacccactcttttattggatggaatacatgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaaga 32598991  T
Q  120 gttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatgatcagatacatctctaggaagcacccaaagaaccggtgtatcctaggtg 219  Q
    || ||||||||||| ||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598990 gtgagtattaaagagaatgtttaaaagagaatgttgctaacatttctcatgatcagatacatctctaggaagcacccaaagaaccggtgtatcctaggtg 32598891  T
Q  220 tgacccaattatccaaaacaagaactttatctatccggctcattaccaccccatttgagtgaagccaagtaaatttccaacctaaaggatttaaatcctc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32598890 tgacccaattatccaaaacaagaactttatctatccggctcattaccaccccatttgagtgaagccaagtaaatttccaacctaaaggatttaaatcctc 32598791  T
Q  320 ttagtccacttccaccnnnnnnnttatcaaagattcatctcact 363  Q
    ||||||||||||||||       ||||||||||||||| |||||    
T  32598790 ttagtccacttccaccaaaaaaattatcaaagattcatttcact 32598747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 34905378 - 34905508
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||| ||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |    
T  34905378 cactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtga 34905477  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| |||   |||| |||||||||||||    
T  34905478 gtattagagagggtgttcaaaagagagtgtt 34905508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 12753898 - 12753754
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    |||||||  |||||||  ||||| || ||||||| ||||||||||||||| |||||| ||  ||||| | |||||||||||||||  ||||||||||  |    
T  12753898 cactctttcattggataaaatacatgcatgtcccaccactttgtgtgggttctattttcagggtgtacactcacaatgatttaaactaataaaagagcga 12753799  T
Q  124 gtattaaagaaaatgtttaaaagagagtgttactaacattcctca 168  Q
    |||||| ||| | |||| ||||||||||||| |||  ||||||||    
T  12753798 gtattagagagagtgttgaaaagagagtgttgctagtattcctca 12753754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 32112816 - 32112725
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||||||||  ||||| |||||||||||| |||||||||||||| |||||| ||||| | ||||| ||| |||||| |||||||||||||    
T  32112816 tttgtgtgggttttattttcaaagtgtagatccacaatgatttaaaacaataagagagtgaatattagagagaatgttcaaaagagagtgtt 32112725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 10133272 - 10133166
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || |||| | |||| |||||||||||  |||||||||||||| |||||||||||| ||||||||||  | | || ||||||    
T  10133272 tgtatgtcccaccactttatgggggttcaattttcaaagtgtagaaccacaatgatttaaaccaataaaagagtgagtattaaagtgagtattcaaaaga 10133173  T
Q  148 gagtgtt 154  Q
    |||||||    
T  10133172 gagtgtt 10133166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 31116262 - 31116157
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||||||||||||| |||   |||||||||| | |||||||||| || |||||||||| ||||| |  |||||||||||||| |||||| ||||| |    
T  31116262 cactcttctattggatgaaatcaatgtatgtcccactactttgtgtgtgttctatttccaatgtgtaaacccacaatgatttaaaccaataagagagtga 31116163  T
Q  124 gtatta 129  Q
    ||||||    
T  31116162 gtatta 31116157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 16852087 - 16851981
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| |||||||||  |||| | |||| |||||||||||  |||||||||||||| |||||| |||||  ||||||  ||  ||||| ||||||    
T  16852087 tgtatgtcccaccactttgtaggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtgggtattagggaggatgttcaaaaga 16851988  T
Q  148 gagtgtt 154  Q
    |||||||    
T  16851987 gagtgtt 16851981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 445884 - 445965
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||| | ||||||||||||||| | |||| |||||| |||| ||||||||||||||| |||||| ||| | |||||||    
T  445884 tgtatgtcacaccactttgtgtgggttcaattttcaaagtctagagtcacaatgatttaaaccaataagagaatgagtatta 445965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 169
Target Start/End: Complemental strand, 19090356 - 19090207
Alignment:
Q  21 acccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaaga 119  Q
    |||||||||| |||||| || |||   |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| ||| || || ||||||||||    
T  19090356 acccactcttttattgggtgaaatcaatgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgaattcaaccaataaaaga 19090257  T
Q  120 gttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 169  Q
    || |||  || ||| | || | ||||||||||||| ||| ||||||||||    
T  19090256 gtgagtgctagagagagtgctcaaaagagagtgttgctagcattcctcat 19090207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 163
Target Start/End: Original strand, 16436145 - 16436245
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacat 162  Q
    ||||||||||| ||||||| ||||||||||  || || |||||||| ||||||  || | | ||||||| | | |||||||||||||||||| |||||||    
T  16436145 tttgtgtgggttctatttctaaagtgtagacccaaaaagatttaaaccaataatcgactgaatattaaaaagagtgtttaaaagagagtgttgctaacat 16436244  T
Q  163 t 163  Q
    |    
T  16436245 t 16436245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 21987358 - 21987458
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    ||||| |||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  21987358 tgtatatcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 21987457  T
Q  148 g 148  Q
    |    
T  21987458 g 21987458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 115
Target Start/End: Complemental strand, 12780873 - 12780806
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataa 115  Q
    |||||||| | | ||||||||| ||| | |||| |||||||||||| |||||||||||||| ||||||    
T  12780873 tgtatgtctcactactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataa 12780806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 17144756 - 17144685
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    |||| |||||||||||  ||||||||||||||  |||||| |||| ||||||||||| | || |||||||||    
T  17144756 attttcaaagtgtagacccacaatgatttaaactaataaaggagtaagtattaaagagagtggttaaaagag 17144685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 5106364 - 5106470
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||||||  | |||| ||||||||| |  ||||| |||||||| |||||| ||||| | ||||| |||   |||| ||||||    
T  5106364 tgtatgtcccaccactttgtgtgggatcaattttcaaagtgtacacccacaaggatttaaaccaataatagagtgaatattagagagtgtgttcaaaaga 5106463  T
Q  148 gagtgtt 154  Q
    | |||||    
T  5106464 gggtgtt 5106470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 12794865 - 12794811
Alignment:
Q  110 caataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattc 164  Q
    |||||||||| | ||||||| || |||| || |||||||||||||||||||||||    
T  12794865 caataaaagaatgagtattagagtaaatattcaaaagagagtgttactaacattc 12794811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 4e-32; HSPs: 34)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 55452158 - 55452048
Alignment:
Q  19 gtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaag 118  Q
    |||| ||||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||| |||| ||||    
T  55452158 gtactcactcttttattggatggaatacatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagactcataatgatttaaaccaatgaaag 55452059  T
Q  119 agttagtatta 129  Q
    ||| |||||||    
T  55452058 agtgagtatta 55452048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 41452039 - 41451894
Alignment:
Q  18 agtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||| ||||||| ||||||||| |||    ||||||||| ||||||||||||||| | |||| ||||| |||||  |||||||||||||| |||||| |    
T  41452039 agtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtagacccacaatgatttaaaccaataaga 41451940  T
Q  118 gagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    |||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  41451939 gagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 41451894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 24734741 - 24734886
Alignment:
Q  18 agtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||| ||||||| ||||||||| |||    ||||||||| ||||||||||||||| | |||| ||||| ||||   |||||||||||||| |||||| |    
T  24734741 agtactcactcttttattggatgaaatcaaagtatgtcccaccactttgtgtgggttcaattttcaaagagtaggcccacaatgatttaaaccaataaga 24734840  T
Q  118 gagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    |||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  24734841 gagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 24734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 129
Target Start/End: Original strand, 46450107 - 46450213
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccacttt-gtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtt 122  Q
    ||||||| |||| ||||||||   |||||||||| ||||||| |||||||| |||||| |||||||||||  |||||||||||||| |||||| |||||     
T  46450107 cactcttttattagatggaatcaatgtatgtcccaccacttttgtgtgggttctatttgcaaagtgtagacccacaatgatttaaaccaataagagagtg 46450206  T
Q  123 agtatta 129  Q
    |||||||    
T  46450207 agtatta 46450213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 18427264 - 18427183
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| ||| ||||||||||| |||||| |||||||||||  |||||||||||||| |||||| ||||| |||||||    
T  18427264 tgtatgtcccaccattttgtgtgggttctattttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtatta 18427183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 20791362 - 20791466
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  20791362 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 20791461  T
Q  148 gagtg 152  Q
    |||||    
T  20791462 gagtg 20791466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 28529295 - 28529432
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| |||||  |||||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |    
T  28529295 cactcttttattggatgaaatcaatgtatgtcccaccact--gtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtga 28529392  T
Q  124 gtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    |||||| |||   |||| |||||||||||||  |||||||    
T  28529393 gtattagagagggtgttcaaaagagagtgttgttaacatt 28529432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 129
Target Start/End: Original strand, 46161024 - 46161094
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||||||| ||| ||||||||||||||||||| || ||||||||||| |||||| ||||| |||||||    
T  46161024 ccactttgtgttggttctatttccaaagtgtagatccataatgatttaaaccaataagagagtgagtatta 46161094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 149
Target Start/End: Original strand, 48351515 - 48351603
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||||||||| | |||| ||||||||| || || |||||||||||||||||| |||   ||||||| |||||||||| ||||||||    
T  48351515 actttgtgtgggttcaattttcaaagtgtatatccataatgatttaaatcaataagagaaagagtattagagaaaatgttcaaaagaga 48351603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 52124070 - 52123955
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| | | |||||| |||| | |||| |||||||||||  |||||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  52124070 tgtatgtcccactattttgtgggggttcaattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 52123971  T
Q  148 gagtgttactaacatt 163  Q
    ||||||| ||| ||||    
T  52123970 gagtgttgctagcatt 52123955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 752461 - 752539
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||| ||||||||||||||| ||||||| ||||||||||  ||||||||||||||  ||||| ||| | |||||||    
T  752461 atgtcccaccactttgtgtgggttctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 752539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 20493559 - 20493453
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||  |||||||||| |||| | || | |||||||||||  |||||||||||||| |||||| ||||| |||| || ||| | |||| ||||||    
T  20493559 tgtatgtcctaccactttgtgggggttcaatattcaaagtgtagacccacaatgatttaaaccaataagagagtgagtaatagagagagtgttcaaaaga 20493460  T
Q  148 gagtgtt 154  Q
    |||||||    
T  20493459 gagtgtt 20493453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 145
Target Start/End: Complemental strand, 2419594 - 2419481
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    |||||||||||||   || ||||||  ||||||||  || || |||||||||| |||||||  |||||||||||||| |||||| | ||| |||||||||    
T  2419594 tattggatggaatcaatgcatgtcctaccactttgcatgagttctatttccaatgtgtagacccacaatgatttaaaccaataagaaagtgagtattaaa 2419495  T
Q  132 gaaaatgtttaaaa 145  Q
    |||| |||| ||||    
T  2419494 gaaagtgttcaaaa 2419481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 19345114 - 19345033
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| |||||||||  |||| | |||| |||| |||||| ||||||||||||||| |||||||||| | |||||||    
T  19345114 tgtatgtcccaccactttgttggggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagaataagtatta 19345033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 38138695 - 38138590
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    |||| |||| ||| ||||||| | | |||| | |||||| ||||| |||||||||||||| |||||| ||||| ||||||||| ||| || | |||||||    
T  38138695 gtatatcccaccattttgtgtagtttctatcttcaaagtatagatccacaatgatttaaaccaataagagagtaagtattaaataaagtgatcaaaagag 38138596  T
Q  149 agtgtt 154  Q
    ||||||    
T  38138595 agtgtt 38138590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 14236087 - 14236191
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||||| ||||||| || | || ||||||||||||||||||| |||||| ||||| | |||||||| ||| ||||||| | | | |||| |||| |||    
T  14236087 tatgtcccaccactttatgcgagttctatttccaaagtgtagatccacaataatttagaccaataaaaaagtgagtattagaaagagtgttcaaaacaga 14236186  T
Q  150 gtgtt 154  Q
    |||||    
T  14236187 gtgtt 14236191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 163
Target Start/End: Complemental strand, 29588835 - 29588732
Alignment:
Q  60 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaa 159  Q
    |||||| |||| || | |||| |||||||||||  ||||||||||||||||||||| ||||| ||| ||| ||| | |||| |||||||| | ||||||     
T  29588835 cactttatgtgagttcaattttcaaagtgtagacccacaatgatttaaatcaataagagagtgagtgttatagagagtgttcaaaagagaattttactag 29588736  T
Q  160 catt 163  Q
    ||||    
T  29588735 catt 29588732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 129
Target Start/End: Original strand, 742025 - 742103
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||| ||||||||||||| | ||||||| ||||||||||  ||||||||||||||  ||||| ||| | |||||||    
T  742025 atgtcccaccactttgtgtggattctatttctaaagtgtagacccacaatgatttaaactaataagagaatgagtatta 742103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 133
Target Start/End: Original strand, 138877 - 138914
Alignment:
Q  96 acaatgatttaaatcaataaaagagttagtattaaaga 133  Q
    |||||||||||||||||||||||||| |||||||||||    
T  138877 acaatgatttaaatcaataaaagagtaagtattaaaga 138914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 168
Target Start/End: Complemental strand, 5452198 - 5452056
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   ||||| |||| ||||||||||||| | | |||| | |||||||||  | ||| ||||||||||||||| ||||  |    
T  5452198 cactcttttattggatgaaatcaatgtatttcccaccactttgtgtggattcaattttctaagtgtaga--cccaaggatttaaatcaataagagagcga 5452101  T
Q  124 gtattaaagaaaatgtttaaaagagagtgttactaacattcctca 168  Q
    |||||  ||| | |||| ||||||||||||| ||| |||| ||||    
T  5452100 gtattggagagagtgttcaaaagagagtgttgctagcattactca 5452056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 133
Target Start/End: Complemental strand, 10948674 - 10948589
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 133  Q
    ||||||| || |||||||||||  || | ||||  |||||||| |  |||||||||||||| |||||||||||| |||||||||||    
T  10948674 tgtatgttccaccactttgtgtttgttcaatttttaaagtgtaaacccacaatgatttaaaccaataaaagagtgagtattaaaga 10948589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 29755579 - 29755672
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||||| | |||| ||||||||||||  ||||||||||||| |||||| || ||  |||||| ||  | |||| |||||||||||||    
T  29755579 actttgtgtgggttcaattttcaaagtgtagatcaacaatgatttaaaccaataagagggtaggtattagagggagtgttcaaaagagagtgtt 29755672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 37776817 - 37776736
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||  ||||||||||||||| | |||| |||||||||||   ||||||||||||| || ||| ||||| |||||||    
T  37776817 tgtatgtcctaccactttgtgtgggttcaattttcaaagtgtagacctacaatgatttaaaccactaagagagtgagtatta 37776736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 148
Target Start/End: Original strand, 38414713 - 38414813
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||| |||||||||||   ||||  ||||||||||| ||| || ||||||| |||||| ||||| ||| ||||||| |||| | ||||||    
T  38414713 tgtatgtcccaccattttgtgtgggtttaatttttaaagtgtagatccacgataatttaaaccaataagagagtgagtgttaaagagaatgctcaaaaga 38414812  T
Q  148 g 148  Q
    |    
T  38414813 g 38414813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 39186030 - 39186102
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   ||||||||||||||||||| ||||    
T  39186030 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataagagag 39186102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 83 - 154
Target Start/End: Original strand, 2009095 - 2009166
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||||||| ||||||| |||||||||||||||| | | | ||||| |||  |||||||||||||| ||||    
T  2009095 aaagtgtagactcacaataatttaaatcaataaaaaaatgaatattagagaggatgtttaaaagagaatgtt 2009166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 169
Target Start/End: Original strand, 27243114 - 27243233
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgta-gattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||| ||||||| ||||||| | |||||||||||||| ||  |||| ||||||||  |||| | ||||| ||||||| | | | |||| ||||||||    
T  27243114 atgtcccaccactttatgtgggttccatttccaaagtgtatgacccacattgatttaacccaatgagagagtgagtattagaaagagtgttcaaaagaga 27243213  T
Q  150 gtgttactaacattcctcat 169  Q
    ||||| ||| || |||||||    
T  27243214 gtgttgctagcactcctcat 27243233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 24429104 - 24429058
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||||||| |||||||||||||| |||||||| ||| |||||||    
T  24429104 aaagtgtagatccacaatgatttaaaccaataaaatagtgagtatta 24429058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Original strand, 43016514 - 43016560
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||| |||||||| |||||||||||||||||| ||||| |||||||    
T  43016514 aaagtatagattcataatgatttaaatcaataagagagtgagtatta 43016560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 8825091 - 8824982
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||||| ||| ||| || |||| | |||| |||||| || | ||||||| ||||||| |||||| ||||| ||||||||||| | |||| |||| |||    
T  8825091 tatgtcccaccattttatgcgggttcaattttcaaagtctacactcacaataatttaaaccaataagagagtgagtattaaagagagtgttcaaaacaga 8824992  T
Q  150 gtgttactaa 159  Q
     |||| ||||    
T  8824991 atgttgctaa 8824982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 22856319 - 22856271
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagt 125  Q
    |||| |||||||||||| |||||| ||||||| ||||| ||||||||||    
T  22856319 attttcaaagtgtagatccacaattatttaaaccaatagaagagttagt 22856271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 29388679 - 29388635
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||| ||||||||||| |||||||||||||| ||||||| |||||    
T  29388679 attttcaaagtgtagactcacaatgatttaagtcaataagagagt 29388635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 133
Target Start/End: Original strand, 41607506 - 41607562
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 133  Q
    |||| |||||||||||| |||| | |||||||||||||||||| | | |||||||||    
T  41607506 attttcaaagtgtagatccacagttatttaaatcaataaaagaataattattaaaga 41607562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 54141007 - 54140887
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| |||||||  |||||| | |||| |||||||||| ||| ||| |||||| |  ||||||| |||| |||  || ||||| || | |||||    
T  54141007 tgtatgtcccaccactttacgtgggttccattttcaaagtgtaggttctacattgatttcatccaataaatgagtgagtgctagagaaagtgctcaaaag 54140908  T
Q  147 agagtgttactaacattcctc 167  Q
    |||||||| ||| ||||||||    
T  54140907 agagtgttgctagcattcctc 54140887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 32 - 154
Target Start/End: Original strand, 27862 - 27984
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    |||||||||||||   |||||||||| ||||||||||||||| ||||||||||||||||||  |||||||||||||| |||||| ||||| |||||||||    
T  27862 tattggatggaatcaatgtatgtcccaccactttgtgtgggttctatttccaaagtgtagacccacaatgatttaaaccaataagagagtgagtattaaa 27961  T
Q  132 gaaaatgtttaaaagagagtgtt 154  Q
    || | |||| ||||||| |||||    
T  27962 gagagtgttcaaaagagggtgtt 27984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 24 - 163
Target Start/End: Complemental strand, 1977311 - 1977172
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||||| ||||||| |||   |||||||||  ||||||||||||||| | |||| |||||||||||| |||||||||||||| |||||||||||| |    
T  1977311 cactcttctgttggatgaaatcaatgtatgtccaaccactttgtgtgggttcaattttcaaagtgtagatccacaatgatttaaaccaataaaagagtga 1977212  T
Q  124 gtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    |||||| |||   |||| ||||||| ||||||||| ||||    
T  1977211 gtattagagagtgtgttcaaaagagtgtgttactagcatt 1977172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 36804969 - 36804847
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    |||||||||||||   |||||||||| ||| ||||||||||| | |||| |||| | || || |||||| |||||||||||||| ||||| ||||||| |    
T  36804969 tattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttcaaaatatacatccacaataatttaaatcaataagagagtaagtattaga 36804870  T
Q  132 gaaaatgtttaaaagagagtgtt 154  Q
    || |||||| |||||||||||||    
T  36804869 gagaatgttgaaaagagagtgtt 36804847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 77 - 154
Target Start/End: Complemental strand, 6098862 - 6098785
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||| |||||||||||| |||||| |||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  6098862 attttcaaagtgtagatccacaataatttaaatcaataagagagtgagtattagagagaatgtttaaaagagagtgtt 6098785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 163
Target Start/End: Original strand, 16983462 - 16983575
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||||  ||||||||| |||| | |||| ||||||||||| ||||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||||    
T  16983462 tatgtcccatcactttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaga 16983561  T
Q  150 gtgttactaacatt 163  Q
    ||||| ||| ||||    
T  16983562 gtgttgctagcatt 16983575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 8903918 - 8904024
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||| ||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |||| || | || ||||| ||||||    
T  8903918 tgtatgtcccaccactttgtgtcggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtaatagaaaagatgttcaaaaga 8904017  T
Q  148 gagtgtt 154  Q
    |||||||    
T  8904018 gagtgtt 8904024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 23685197 - 23685297
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || ||||||||||||||||||||| |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  23685197 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagattcgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 23685292  T
Q  148 gagtg 152  Q
    |||||    
T  23685293 gagtg 23685297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 5979922 - 5980051
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    |||||||||||||||||  ||   |||||||||| ||||||||||||||| | |||| ||||||||  | |||||||| ||| || |||||| ||||| |    
T  5979922 cactcttctattggatgagatcaatgtatgtcccaccactttgtgtgggttcaattttcaaagtgtgaactcacaatggttt-aaccaataagagagtga 5980020  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| ||| | |||| |||||||||||||    
T  5980021 gtattagagagagtgttcaaaagagagtgtt 5980051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 24056039 - 24055933
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| |||||||||||  || | |||| |||||||||||  |||||| ||||||| |||||| ||||| ||| ||| ||||| |||| ||||||    
T  24056039 tgtatgtcccaccactttgtgtaagttcaattttcaaagtgtagacccacaattatttaaaccaataagagagtgagtgttagagaaagtgttcaaaaga 24055940  T
Q  148 gagtgtt 154  Q
    |||||||    
T  24055939 gagtgtt 24055933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 59 - 129
Target Start/End: Complemental strand, 7493446 - 7493375
Alignment:
Q  59 ccactttgtgt-gggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||||||| |||| |||||| ||||||||||| ||||||||||||||| |||||| ||||| |||||||    
T  7493446 ccactttgtgttgggttctattttcaaagtgtagactcacaatgatttaaaccaataagagagtgagtatta 7493375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 17499345 - 17499266
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||| ||| ||||||| ||| | |||| |||||||||||| |||||||||||||| |||||| ||||| |||||||    
T  17499345 tatgtcccaccattttgtgttggttcaattttcaaagtgtagatccacaatgatttaaaccaataagagagtgagtatta 17499266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 32072139 - 32072230
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataa 115  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||||||||| | ||||  ||||||||||  |||||| ||||||||||||||    
T  32072139 cactcttttattggatgaaatgaatgtatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaattatttaaatcaataa 32072230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 8914837 - 8914910
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||||| ||||||||||||||| |  ||| |||||||||||  |||||||||||||| |||||| |||||    
T  8914837 tgtatgtcccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataagagagt 8914910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 96 - 169
Target Start/End: Complemental strand, 5095826 - 5095753
Alignment:
Q  96 acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 169  Q
    ||||||||||||| |||||| ||||| ||||||| |||  ||||||||||| ||||||| ||| |||| |||||    
T  5095826 acaatgatttaaaccaataagagagtgagtattagagaggatgtttaaaagtgagtgttcctagcattgctcat 5095753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 28413983 - 28413902
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| |||||||||||| || | |||| |||||| ||||  || ||||||||||| |||||||||| | |||||||    
T  28413983 tgtatgtcccaccactttgtgtgagttcaattttcaaagtatagacccataatgatttaaaccaataaaagaatgagtatta 28413902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 43506601 - 43506682
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||| || ||||||||||||||| ||| || ||| |||||||  |||||||||||||  |||||| ||||| |||||||    
T  43506601 tgtatgttccaccactttgtgtgggttctactttcaatgtgtagacccacaatgatttaagccaataagagagtgagtatta 43506682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 45246500 - 45246572
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   ||||||||||||||||||| ||||    
T  45246500 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaatcaataagagag 45246572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 1205893 - 1206000
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagat-tcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||| | ||||||| | ||||| ||||||||||||||||| | | ||| |||||| | ||||||||||||| |||  |||||| | |||| ||||     
T  1205893 tgtatgtctcaccactttatatgggttctatttccaaagtgtaggtcttacattgatttcactcaataaaagagtgagtgctaaagagagtgttcaaaat 1205992  T
Q  147 agagtgtt 154  Q
    ||||||||    
T  1205993 agagtgtt 1206000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 31301157 - 31301286
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   ||||||| || |||||||||||| || |||||| ||| ||||||| ||| ||| ||||||| |||||| ||| | |    
T  31301157 cactcttttattggatgaaatcaatgtatgttccaccactttgtgtgagttctattttcaatgtgtaga-tcataataatttaaaccaataagagaatga 31301255  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
     ||||  ||| |||||  |||||||||||||    
T  31301256 atatttgagataatgtacaaaagagagtgtt 31301286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 160
Target Start/End: Complemental strand, 9952868 - 9952760
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagag 150  Q
    ||||||| |||||||||||| || | |||| ||||||||| |  |||||||||||||| |||||| | | | |||||| |||| | || || ||||||||    
T  9952868 atgtcccaccactttgtgtgagttcaattttcaaagtgtaaacccacaatgatttaaaccaataagataatgagtatttaagagagtg-ttcaaagagag 9952770  T
Q  151 tgttactaac 160  Q
    |||| |||||    
T  9952769 tgttgctaac 9952760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 24 - 120
Target Start/End: Complemental strand, 20225479 - 20225383
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    ||||||| ||||||||||||| | || ||||||| ||||||| ||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||    
T  20225479 cactcttttattggatggaatccatgcatgtcccaccactttttgtgggttctatttccaaagtgtagactcacaatgatttaaaccaataagagag 20225383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 39471223 - 39471329
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||| ||| | || | |||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| |||||||||||||    
T  39471223 tgtatgtcccaccactttgtgttggttcaatcttcaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagaatgtttaaaaga 39471322  T
Q  148 gagtgtt 154  Q
    |||||||    
T  39471323 gagtgtt 39471329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 32 - 169
Target Start/End: Original strand, 24834628 - 24834765
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    |||||||||||||   |||||||||| ||| ||||||||||| | |||| |||||||||||  |||||| ||||||| |||||| ||||| | ||||| |    
T  24834628 tattggatggaatcaatgtatgtcccaccattttgtgtgggttcaattttcaaagtgtagacccacaataatttaaaccaataagagagtgactattaga 24834727  T
Q  132 gaaaatgtttaaaagagagtgttactaacattcctcat 169  Q
    || |  ||||||||||||||||| ||| ||||||||||    
T  24834728 gagagagtttaaaagagagtgttgctagcattcctcat 24834765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 163
Target Start/End: Original strand, 43771168 - 43771307
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||||| ||||||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| |    
T  43771168 cactcttttattggatgaaatcaatgtatgtcccaccactctgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtga 43771267  T
Q  124 gtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    ||||||||||   |||| ||||||||| ||| ||| ||||    
T  43771268 gtattaaagagggtgttcaaaagagagcgttgctagcatt 43771307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 49242238 - 49242342
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||||  |||||||||||||| | |||| ||| ||||||||||||||||||||||| |||||| ||| | ||||| | ||| | |||||||||||||    
T  49242238 tatgtcccatcactttgtgtgggttcaattttcaatgtgtagattcacaatgatttaaaccaataagagaatgagtatcatagagagtgtttaaaagaga 49242337  T
Q  150 gtgtt 154  Q
    |||||    
T  49242338 gtgtt 49242342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 49077317 - 49077436
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||||| ||||||||||||||| | ||||  ||||||||||  |||||||||||||| |||||| ||  | |||| | |||||  |||||||||||||    
T  49077317 tatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagtttgagtactcaagaaggtgtttaaaagaga 49077416  T
Q  150 gtgttactaacattcctcat 169  Q
    ||||||||| |||| |||||    
T  49077417 gtgttactagcattactcat 49077436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 41153335 - 41153205
Alignment:
Q  25 actcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttag 124  Q
    |||||| ||||||||| ||| | || ||||||| ||||||||||| ||| ||||||| |||||||| ||||||||||||||| | |||||||| ||| |     
T  41153335 actcttttattggatgaaattcatgcatgtcccaccactttgtgtaggttctatttctaaagtgtacattcacaatgatttagaccaataaaaaagtaaa 41153236  T
Q  125 tattaaagaaaatgtttaaaagagagtgtta 155  Q
    || |||| ||| ||||  ||||||| |||||    
T  41153235 tactaaaaaaagtgttctaaagagaatgtta 41153205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 27 - 129
Target Start/End: Complemental strand, 45081877 - 45081775
Alignment:
Q  27 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagta 126  Q
    |||| |||| |||||||||| || |||| |  ||| ||||||||||| |||||||||||||||| | ||||||| ||||||| |||||||||||| ||||    
T  45081877 tcttttatttgatggaatacatgcatgttctaccattttgtgtgggtcctatttccaaagtgtacactcacaataatttaaaccaataaaagagtgagta 45081778  T
Q  127 tta 129  Q
    |||    
T  45081777 tta 45081775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 75 - 152
Target Start/End: Complemental strand, 37451100 - 37451023
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtg 152  Q
    |||||| ||||||||||| || |||||||||||| |||||||||||| ||||||| ||||  ||||||||||||||||    
T  37451100 ctattttcaaagtgtagactcgcaatgatttaaaccaataaaagagtgagtattagagaaggtgtttaaaagagagtg 37451023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 20454616 - 20454710
Alignment:
Q  60 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||||||| ||| | |||| |||||||||||| ||||||||||||||||||||| ||||| ||| ||| ||| | |||| |||||||| ||||    
T  20454616 cactttgtgttggttcaattttcaaagtgtagatccacaatgatttaaatcaataacagagtgagtgttagagagagtgttcaaaagagaatgtt 20454710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 24 - 154
Target Start/End: Complemental strand, 34129538 - 34129408
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    |||||||||||||||||  ||   ||||| |||| |||||||||||| || | |||| |||||||| || |||||||| |||||| |||||||||||| |    
T  34129538 cactcttctattggatgagatcaatgtatatcccaccactttgtgtgtgttcaattttcaaagtgtggactcacaatggtttaaaccaataaaagagtga 34129439  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| |||   |||| | |||||||||||    
T  34129438 gtattagagattgtgttcagaagagagtgtt 34129408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 13070006 - 13070127
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    ||||||| || ||||||| ||||||| | |||| |||||||||| | | ||| |||||| | ||||||||||||| ||| ||| |||||||||| |||||    
T  13070006 tgtatgttccaccactttatgtgggttccattttcaaagtgtaggtcctacattgattttactcaataaaagagtgagtgttagagaaaatgttcaaaag 13070105  T
Q  147 agagtgttactaacattcctca 168  Q
    |||||||| ||| || ||||||    
T  13070106 agagtgttgctagcactcctca 13070127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 82 - 163
Target Start/End: Complemental strand, 38537593 - 38537512
Alignment:
Q  82 caaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    ||||||||||||||| |||||||||||||||||||||| | | ||||| ||| | |||| |||||| |||||| ||||||||    
T  38537593 caaagtgtagattcataatgatttaaatcaataaaagaatgattattagagagagtgttcaaaagaaagtgttgctaacatt 38537512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 50164461 - 50164576
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    ||||| |||| ||| |||||| |||| | |||| ||||||||||| ||||||||||||||| |||||| | ||| || |||| ||| | |||| ||||||    
T  50164461 tgtatctcccaccattttgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaagtgagcattagagagagtgttcaaaaga 50164560  T
Q  148 gagtgttactaacatt 163  Q
     |||||||||| ||||    
T  50164561 tagtgttactagcatt 50164576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 19937286 - 19937180
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||| | | |||| || |||||| |||||| |||||  ||||||||| ||| ||| |||||||| || |||||||| | |||||||||||    
T  19937286 tgtatgtcccaccattatatgtgagttctattttcaaagtatagatcgacaatgattcaaaccaacaaaagagtgagaattaaagagagtgtttaaaaga 19937187  T
Q  148 gagtgtt 154  Q
    |||||||    
T  19937186 gagtgtt 19937180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 722224 - 722329
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||     
T  722224 gtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaa 722323  T
Q  149 agtgtt 154  Q
    ||||||    
T  722324 agtgtt 722329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 754693 - 754588
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||     
T  754693 gtatgtcccaccactttgtgtaagttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaagaa 754594  T
Q  149 agtgtt 154  Q
    ||||||    
T  754593 agtgtt 754588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 19933555 - 19933474
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattc 164  Q
    |||||||||| | |||||||||||||  |||||| ||||| |||||||||| | |||| |||| |||||||| |||||||||    
T  19933555 aaagtgtagactaacaatgatttaaactaataaatgagttggtattaaagagagtgttcaaaatagagtgttgctaacattc 19933474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 168
Target Start/End: Original strand, 8109022 - 8109142
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| | | |||||||  || | |||| |||||||||||  |||||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  8109022 tgtatgtcccactaatttgtgtttgttcaattttcaaagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 8109121  T
Q  148 gagtgttactaacattcctca 168  Q
    ||||||| ||| |||| ||||    
T  8109122 gagtgttgctagcattactca 8109142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 147
Target Start/End: Complemental strand, 24938553 - 24938430
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||| ||||| ||| | | ||||  ||||||||||   ||||||||||||| |||||| ||||| |    
T  24938553 cactcttttattggatgtaatcaatgtatgtcccaccattttgtttggattcaatttttaaagtgtagacctacaatgatttaaaccaataagagagtaa 24938454  T
Q  124 gtattaaagaaaatgtttaaaaga 147  Q
    |||||| ||||| |||| ||||||    
T  24938453 gtattagagaaagtgttgaaaaga 24938430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 45311060 - 45310981
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||| |||||||||| || | | |||| ||||||| ||| | |||||||||||||||||||| ||||| |||||||    
T  45311060 tatgtcccaccactttgtggggattcaattttcaaagtgaagacttacaatgatttaaatcaataagagagtaagtatta 45310981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 169
Target Start/End: Original strand, 52671866 - 52672016
Alignment:
Q  18 agtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||| |||| || ||||||||| ||||  |||||||||| ||| ||| |||  || | ||||  |||||||| |||| ||||||||||||  ||||| |    
T  52671866 agtactcacttttttattggatgaaataaatgtatgtcccaccattttatgtaagttcaatttttaaagtgtaaattctcaatgatttaaactaataaga 52671965  T
Q  118 gagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcat 169  Q
     ||| ||||||||||| | ||||||||||| | |||| |||| |||||||||    
T  52671966 tagtgagtattaaagagagtgtttaaaagataatgttgctaa-attcctcat 52672016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 18421897 - 18421825
Alignment:
Q  96 acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctca 168  Q
    ||||||||||||| |||||||| ||| | ||||||| ||| | || ||||||||||||| |||||||| ||||    
T  18421897 acaatgatttaaaccaataaaaaagtgaatattaaataaagtattcaaaagagagtgttgctaacattactca 18421825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 25719227 - 25719123
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtag-attcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| |||||||   ||||||||| ||||| |  |||||||||||||  |||| | ||||| ||||||| ||||| |||| |||||    
T  25719227 tgtatgtcccaccactttatgtgggtttcatttccaaaatgtaggacccacaatgatttaacccaatcagagagtgagtattagagaaattgttcaaaag 25719128  T
Q  147 agagt 151  Q
    |||||    
T  25719127 agagt 25719123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 47009269 - 47009361
Alignment:
Q  62 ctttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||| || | |||| |||||||||||| |||||||||||||| |||||| | ||| ||||||| |||   |||| |||||||| ||||    
T  47009269 ctttgtgtgagttcaattttcaaagtgtagatacacaatgatttaaaccaataagaaagtgagtattagagagggtgttcaaaagagaatgtt 47009361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 19447197 - 19447304
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| ||||||| | |||| |||| || ||   | |||||||||||| ||||| | ||||| ||||||||||| | |||| |||||    
T  19447197 tgtatgtcccaccactttatgtgggttccattttcaaaatgcaggaccgacaatgatttaactcaattagagagtgagtattaaagagagtgttcaaaag 19447296  T
Q  147 agagtgtt 154  Q
    ||||||||    
T  19447297 agagtgtt 19447304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 26361422 - 26361307
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||| ||| ||| ||||||||||| | || | |||||||||||  || ||||||||||| ||||||  |||| ||||||| |||   |||| ||||||    
T  26361422 tgtatgacccaccattttgtgtgggttcaatattcaaagtgtagacccataatgatttaaaccaataagtgagtgagtattagagagggtgttcaaaaga 26361323  T
Q  148 gagtgttactaacatt 163  Q
    ||||||| ||| ||||    
T  26361322 gagtgttgctagcatt 26361307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 16178649 - 16178723
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagt 121  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||| ||| ||| |||||| |  ||||||||||||    
T  16178649 tgtatgtcccaccactttatgtgggttccatttccaaagtgtaggttctacattgatttcatccaataaaagagt 16178723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 161
Target Start/End: Complemental strand, 40991676 - 40991590
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaaca 161  Q
    |||||||  |||||||||  |||||||||||||| |||||||||||| ||||| | ||| | |||| |||| | |||||| ||||||    
T  40991676 ctatttctgaagtgtagacccacaatgatttaaaccaataaaagagtgagtatcagagagagtgttcaaaaaaaagtgttgctaaca 40991590  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 75 - 117
Target Start/End: Original strand, 54543431 - 54543473
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||    
T  54543431 ctatttccaatgtgtagattcaaaatgatttaaaccaataaaa 54543473  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 154
Target Start/End: Original strand, 22542448 - 22542553
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    |||||| || ||||||||||||||| | |||| |||||  |||   ||||||||||||||  ||||| ||||| ||||||||| | | |||| ||||||     
T  22542448 gtatgttccaccactttgtgtgggttcaattttcaaagaatagtcccacaatgatttaaactaataagagagtgagtattaaaaagagtgttcaaaagat 22542547  T
Q  149 agtgtt 154  Q
    ||||||    
T  22542548 agtgtt 22542553  T

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Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 167
Target Start/End: Original strand, 41278744 - 41278801
Alignment:
Q  110 caataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 167  Q
    |||||||||||| ||||| |||||||||| |||||||| |||| |  |||||||||||    
T  41278744 caataaaagagtgagtatcaaagaaaatgcttaaaagaaagtgatgataacattcctc 41278801  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 48339454 - 48339381
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| || ||||||||||||||| | |||| ||||| |||||  || |||| |||||| ||||||||||||    
T  48339454 tgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaagagt 48339381  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 50481683 - 50481586
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| ||||||||| |||    ||||||| | ||||||||| ||| | |||||| |||||||||||  |||||| ||||||| |||||| |||||    
T  50481683 cactcttttattggatgaaatcaaagtatgtctcaccactttgtatggtttctattttcaaagtgtagacacacaatcatttaaaccaataagagagt 50481586  T

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Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 115
Target Start/End: Original strand, 4138958 - 4138998
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataa 115  Q
    |||||||||||||||||| || |||| ||||||||||||||    
T  4138958 ctatttccaaagtgtagactcgcaataatttaaatcaataa 4138998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 22592346 - 22592406
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaa 84  Q
    ||||||| ||||||||| ||||  ||| |||||| ||||||||||| ||| ||||||||||    
T  22592346 cactcttttattggatgaaataaatgtttgtcccaccactttgtgtaggttctatttccaa 22592406  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 31250968 - 31250924
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||| |||| ||||||  |||||||||||||||||||||||||||    
T  31250968 attttcaaaatgtagacccacaatgatttaaatcaataaaagagt 31250924  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 48796378 - 48796434
Alignment:
Q  84 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 140  Q
    ||||||||| ||| ||||||||||| |||||||||| | | ||||||| ||||||||    
T  48796378 aagtgtagactcaaaatgatttaaaccaataaaagaatgattattaaataaaatgtt 48796434  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 44274300 - 44274419
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||||||| | | || |||||||||||| |||||||||||||| |||||| ||||| ||| ||| ||| ||| |||||||||    
T  44274300 tgtatgtcccaccactttgtgtgggttcaactttcaaagtgtagatccacaatgatttaaaccaataacagagtgagtgttagagagaatatttaaaaga 44274399  T
Q  148 gagtgttactaacattcctc 167  Q
    |||||||  || ||||||||    
T  44274400 gagtgttgttagcattcctc 44274419  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 48 - 154
Target Start/End: Original strand, 12989257 - 12989363
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||| ||| | |||||||| |||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||    
T  12989257 tgtatgtcccaccactttgtatggattctatttccgaagtgtagacccacaatgatttaaaccaataagagagtgagtattagagagagtgttcaaaaga 12989356  T
Q  148 gagtgtt 154  Q
    |||||||    
T  12989357 gagtgtt 12989363  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 32 - 154
Target Start/End: Complemental strand, 34142269 - 34142147
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    ||||||||| ||| | |||||||| | | ||||||||||||| | |||| ||||||||||| |||||||| |||||| |||||| ||||| | |||||||    
T  34142269 tattggatgaaattcatgtatgtctcactactttgtgtgggttcaattttcaaagtgtagagtcacaatggtttaaaccaataagagagtgaatattaaa 34142170  T
Q  132 gaaaatgtttaaaagagagtgtt 154  Q
    |||||| ||  ||||||||||||    
T  34142169 gaaaatattctaaagagagtgtt 34142147  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 10981584 - 10981665
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| ||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||| ||||| |||||||    
T  10981584 tgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaataagagagtgagtatta 10981665  T

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Target: chr2; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 32 - 148
Target Start/End: Complemental strand, 25730569 - 25730453
Alignment:
Q  32 tattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaa 131  Q
    ||||||||||||||| |||||||| | |||  || ||||||| ||||||  || ||||| | ||||| ||||||||| |||||||||||| | |||||||    
T  25730569 tattggatggaatacatgtatgtctcaccatattatgtgggttctatttttaacgtgtaaactcacagtgatttaaaccaataaaagagtgaatattaaa 25730470  T
Q  132 gaaaatgtttaaaagag 148  Q
     ||||||||||||||||    
T  25730469 aaaaatgtttaaaagag 25730453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 154
Target Start/End: Complemental strand, 25238372 - 25238285
Alignment:
Q  67 tgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||| |||||| |||||||||||| |||||||||||||| |||||||| ||| |||  || ||||| ||||||||||||||||||    
T  25238372 tgtgggttctattttcaaagtgtagatccacaatgatttaaaccaataaaaaagtgagtgctagagaaagtgtttaaaagagagtgtt 25238285  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 26767875 - 26767760
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| |||||||||| |||| | |||| |||| |||||| ||||||||||||||| |||||||||||| ||||||| | | | |||| ||||||    
T  26767875 tgtatgtcccaccactttgtgagggttcaattttcaaattgtagactcacaatgatttaaaccaataaaagagtgagtattagatagagtgttcaaaaga 26767776  T
Q  148 gagtgttactaacatt 163  Q
     |||||| ||| ||||    
T  26767775 aagtgttgctagcatt 26767760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 9470123 - 9470220
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||| ||||| | |||| |||||||||||  |||||||||||||| |||||| |||||    
T  9470123 cactcttttattggatgaaatcaatgtatgtcccaccactttgtttgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagt 9470220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 7919382 - 7919311
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||| ||||||||||||| | | |||| |||||||||||| |||||||||||||| |||||| |||||    
T  7919382 tatgtcccaccactttgtgtggattcaattttcaaagtgtagatccacaatgatttaaaccaataagagagt 7919311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 38464241 - 38464332
Alignment:
Q  60 cactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 151  Q
    ||||||| |||||| | |||| |||||||||||  |||||||||||||| |||||| ||||| ||||||| ||| | |||| ||||||||||    
T  38464241 cactttgcgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagagtaagtattagagagagtgttcaaaagagagt 38464332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 42182955 - 42183077
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| |||||| |  ||||||||||||||||     ||| | |||| |||||    
T  42182955 tgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcacccaataaaagagttagtgccggagagagtgttcaaaag 42183054  T
Q  147 agagtgttactaacattcctcat 169  Q
    |||||||||||| ||||||||||    
T  42183055 agagtgttactagcattcctcat 42183077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 83 - 151
Target Start/End: Complemental strand, 14489618 - 14489550
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 151  Q
    ||||||||||| |||||| ||||||| |||||||||| | ||||||| ||||||| || ||||||||||    
T  14489618 aaagtgtagatccacaataatttaaaccaataaaagaatgagtattagagaaaattttcaaaagagagt 14489550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 19953490 - 19953586
Alignment:
Q  77 atttccaaagtgt-agattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatgat 172  Q
    ||||||||||||| ||| |||| |||||||||  |||||||| ||| ||||||  |||||||||| ||||||||||||| ||| |||| ||| ||||    
T  19953490 atttccaaagtgtgagactcactatgatttaatccaataaaaaagtgagtattggagaaaatgttaaaaagagagtgttgctagcattactcttgat 19953586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 6980223 - 6980128
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||||||||| || | |||| |||||| ||||  ||||||||||| ||  ||||| ||||| ||||||| ||||| |||| |||||||||||||    
T  6980223 ccactttgtgtgagttcaattttcaaagtatagacccacaatgatttcaactaataagagagtgagtattagagaaagtgttcaaaagagagtgtt 6980128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 60 - 154
Target Start/End: Original strand, 11539503 - 11539598
Alignment:
Q  60 cactttgtgtgggtgctatttccaaagtgtagattcacaa-tgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||| || |||||| |||||||||||| || || ||||||||| |||||| ||||| ||||||| ||| | ||| ||||||||| ||||    
T  11539503 cactttgtgtgagttctattttcaaagtgtagatccagaattgatttaaaccaataagagagtgagtattagagagagtgtgtaaaagagaatgtt 11539598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 30718426 - 30718340
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||||| |  ||||| ||||||||||| ||||||||||||||| |||||||| ||| | ||||| ||| | ||| |||||||||    
T  30718426 tttgtgtggattgtattttcaaagtgtagactcacaatgatttaaaccaataaaaaagtgaatattagagagagtgtctaaaagaga 30718340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 84 - 154
Target Start/End: Original strand, 45554661 - 45554731
Alignment:
Q  84 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||||||  |||||||||||||| |||||| | ||| ||||||| ||| |||||| |||||||||||||    
T  45554661 aagtgtagacccacaatgatttaaaccaataagaaagtgagtattagagagaatgttcaaaagagagtgtt 45554731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 37652359 - 37652290
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||||| || || ||||||||  || | |||||||| ||||||||||||||||||||||| ||||||||    
T  37652359 tgtatgttccacccctttgtgtatgttcaatttccaacgtgtagattcacaatgatttaaaccaataaaa 37652290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 15508980 - 15509100
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||| ||| ||||||| | ||||||||||||||||| | ||| |||||| |  |||| ||||||| |||  || ||| | || | |||||    
T  15508980 tgtatgtcccaccattttttgtgggttccatttccaaagtgtagatcctacattgatttcacccaattaaagagtaagtgatatagagagtgctaaaaag 15509079  T
Q  147 agagtgttactaacattcctc 167  Q
    |||||||| ||||||||||||    
T  15509080 agagtgttgctaacattcctc 15509100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 2122888 - 2122967
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||| | ||||||  ||||| ||||||||||||||||| ||||| ||||  | |||||||||| |||| ||||||||    
T  2122888 ctatttctagagtgtaagttcactatgatttaaatcaataagagagtgagtaccagagaaaatgttcaaaaaagagtgtt 2122967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 154
Target Start/End: Complemental strand, 4552926 - 4552848
Alignment:
Q  76 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||| ||| |||||||  |||||||||||||| |||||| ||||| ||||| | | |||||||| ||||| |||||||    
T  4552926 tattttcaatgtgtagacccacaatgatttaaaccaataagagagtgagtatcagaaaaaatgttcaaaagtgagtgtt 4552848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 12098980 - 12098895
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaa-tgatttaaatcaataaaagagttagtattaaaga 133  Q
    ||||||| ||||||||||| || || | |||| ||||||||| | |||||| |||||||||  ||||| ||||| |||||||||||    
T  12098980 gtatgtctcgccactttgtatgagttcaattttcaaagtgtaaactcacaaatgatttaaactaataagagagtgagtattaaaga 12098895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 28898151 - 28898034
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| |||||||   ||||||||||||||||| | ||| |||||| |  |||||||||||| |||  |||||| | |  | |||||    
T  28898151 tgtatgtcccaccactttatgtgggtttcatttccaaagtgtagatcctacattgatttcatccaataaaagagtgagtgctaaagagagtactcaaaag 28898052  T
Q  147 agagtgttactaacattc 164  Q
    |||||||| ||| |||||    
T  28898051 agagtgttgctagcattc 28898034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 472264 - 472156
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaac 160  Q
    |||||||||| || | |||| |||| | || || |||||||||||||| |||||| ||||  ||||||||||| | || | |||||| | |||| |||||    
T  472264 actttgtgtgagttcaattttcaaaatatatatccacaatgatttaaaccaataagagagcgagtattaaagagagtgctcaaaagaaattgtttctaac 472165  T
Q  161 attcctcat 169  Q
    ||| |||||    
T  472164 attactcat 472156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 15508978 - 15508910
Alignment:
Q  100 tgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctca 168  Q
    |||||| | ||||||||||||| ||| ||| | | | |||| ||||||||||||| |||||||||||||    
T  15508978 tgatttcactcaataaaagagtgagtgttagaaagagtgttcaaaagagagtgttgctaacattcctca 15508910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 115
Target Start/End: Original strand, 15884498 - 15884562
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataa 115  Q
    ||||||| ||||||||||||||| | |||| |||| ||||||  |||||| ||||||| ||||||    
T  15884498 atgtcccaccactttgtgtgggttcaattttcaaaatgtagacccacaattatttaaaccaataa 15884562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 129
Target Start/End: Complemental strand, 27494516 - 27494484
Alignment:
Q  97 caatgatttaaatcaataaaagagttagtatta 129  Q
    ||||||||||||||||||||||||| |||||||    
T  27494516 caatgatttaaatcaataaaagagtgagtatta 27494484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 32856238 - 32856134
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 158  Q
    |||||||||||||||   |||| |||||||||||| || | ||||||||| |||||| ||| | ||||||| | |   |||| |||| |||||||| |||    
T  32856238 ccactttgtgtgggttgaattttcaaagtgtagatccatagtgatttaaaccaataagagattgagtattagaaagggtgttcaaaatagagtgttgcta 32856139  T
Q  159 acatt 163  Q
    |||||    
T  32856138 acatt 32856134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 35316468 - 35316400
Alignment:
Q  95 cacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    ||||||||||||||||||||| ||||| ||||| | | | | || | ||||||||||||||||| ||||    
T  35316468 cacaatgatttaaatcaataagagagtgagtatcataaagagtgctcaaaagagagtgttactagcatt 35316400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 36471923 - 36471871
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||| |||| |||| | ||||||||||||||| |||||||||||| |||||||    
T  36471923 attttcaaaatgtaaactcacaatgatttaaaccaataaaagagtgagtatta 36471871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 24 - 130
Target Start/End: Original strand, 33008146 - 33008252
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||||||||| |||||||||| |||||||  |||||||||||||| |||||||||||  |    
T  33008146 cactcttttattggatgaaatcattgtatgtcccaccactttgtgtgggttctatttccaatgtgtagacccacaatgatttaaaccaataaaagagaga 33008245  T
Q  124 gtattaa 130  Q
    |||||||    
T  33008246 gtattaa 33008252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 48374583 - 48374447
Alignment:
Q  18 agtacccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||| ||||||| ||||| ||||||| | || ||||||| ||||||| | ||||| |||||||||||||||| | ||||||| ||||||| ||| || |    
T  48374583 agtactcactcttttattgaatggaattcatgcatgtcccaccactttctatgggttctatttccaaagtgtatactcacaataatttaaaccaacaaga 48374484  T
Q  118 gagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||| ||||||| ||| | |||| |||||||||||||    
T  48374483 gagtgagtattagagagagtgttcaaaagagagtgtt 48374447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 6442231 - 6442346
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    ||||||| || ||| |||||| || | | |||| |||||||||||  |||||||||||||| |||||||||||| ||||||||||| | |||| ||||||    
T  6442231 tgtatgttccaccattttgtggggattcaattttcaaagtgtagacccacaatgatttaaaccaataaaagagtgagtattaaagatagtgttcaaaaga 6442330  T
Q  148 gagtgttactaacatt 163  Q
     |||||| ||||||||    
T  6442331 aagtgttgctaacatt 6442346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 167
Target Start/End: Original strand, 27888348 - 27888467
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||||||| | ||||  ||||||||||  |||||||||||||| |||||| ||||| ||| ||| ||| | || | ||||||    
T  27888348 tgtatgtcccaccactttgtgtgggttcaatttttaaagtgtagacccacaatgatttaaaccaataagagagtgagtgttagagagagtgctcaaaaga 27888447  T
Q  148 gagtgttactaacattcctc 167  Q
    ||||||| ||| ||||||||    
T  27888448 gagtgttgctagcattcctc 27888467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 22189981 - 22190111
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||| ||| ||||||||||||||| | |||| |||||||||||  | |||||||||||| ||||||| |||| |    
T  22189981 cactcttttattggatgaaatcaatgtatggcccaccactttgtgtgggttcaattttcaaagtgtagacccgcaatgatttaaaccaataaacgagtga 22190080  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| |||   |||| |||||||||||||    
T  22190081 gtattagagagggtgttcaaaagagagtgtt 22190111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 44350916 - 44350810
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||| || |||||||| | ||| | |||| ||||||||||| ||||||||||||||| ||| |||||||| ||||||| |||   |||| ||||||    
T  44350916 tgtatgtctcgtcactttgtttaggttcaattttcaaagtgtagactcacaatgatttaaaccaacaaaagagtgagtattagagatggtgttcaaaaga 44350817  T
Q  148 gagtgtt 154  Q
    |||||||    
T  44350816 gagtgtt 44350810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 1316367 - 1316431
Alignment:
Q  76 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 140  Q
    |||||| |||||||| ||| ||||||||||||| |||||||||||| ||||||| ||||||||||    
T  1316367 tatttctaaagtgtacatttacaatgatttaaaccaataaaagagtgagtattagagaaaatgtt 1316431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 24 - 121
Target Start/End: Complemental strand, 31502602 - 31502505
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| ||||||||| |||    ||||||||| ||| |||||||| || | |||| ||||||||||| ||||||||||||||| |||||| |||||    
T  31502602 cactcttttattggatgaaatcaaggtatgtcccaccattttgtgtgcgttcaattttcaaagtgtagactcacaatgatttaaaccaataagagagt 31502505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 59 - 163
Target Start/End: Complemental strand, 25686938 - 25686834
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 158  Q
    ||||||| | ||||| | |||| |||||||||||  |||||||||||||| |||||| | | | ||||||| | | |||||| ||||||||||||| |||    
T  25686938 ccactttttatgggttcaattttcaaagtgtagacccacaatgatttaaaccaataagataatgagtattagaaagaatgttcaaaagagagtgttgcta 25686839  T
Q  159 acatt 163  Q
    |||||    
T  25686838 acatt 25686834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 11824113 - 11824241
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||| ||||||| | | | |||| ||||||||| |  ||||||||||||||||||||| | ||| |    
T  11824113 cactcttttattggatgaaatcaatgtatgtcccaccattttgtgtagcttcaattttcaaagtgtaaacccacaatgatttaaatcaataagaaagtga 11824212  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||  ||| | |||| |||||||||||||    
T  11824213 gtatt--agagagtgttcaaaagagagtgtt 11824241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 46517357 - 46517472
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    ||||| |||| ||| | |||| |||| | |||| ||||||||||| ||||||||||||||| |||||| ||| | ||||||| |||   |||| ||||||    
T  46517357 tgtatatcccaccattctgtgggggttcaattttcaaagtgtagactcacaatgatttaaaccaataagagaatgagtattagagaggctgttcaaaaga 46517456  T
Q  148 gagtgttactaacatt 163  Q
    ||||||| ||| ||||    
T  46517457 gagtgttgctagcatt 46517472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 11692221 - 11692351
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||  ||||||||||| ||| | |||| ||||||||| | ||||| |||||||||  ||||  ||||| |    
T  11692221 cactcttttattggatgaaatcaatgtatgtcctaccactttgtgtaggttcaattttcaaagtgtaaactcacagtgatttaaactaatatgagagtga 11692320  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| |||   |||| |||||||||||||    
T  11692321 gtattagagagtgtgttcaaaagagagtgtt 11692351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 129
Target Start/End: Complemental strand, 12263575 - 12263469
Alignment:
Q  23 ccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtt 122  Q
    |||||||| ||| |||||||||   ||||||||||  |||||||||| ||  | |||| |||||||||||  |||||||||||||| |||||| | |||     
T  12263575 ccactcttttatcggatggaatcaatgtatgtcccatcactttgtgtaggatcaattttcaaagtgtagacccacaatgatttaaaccaataagatagtg 12263476  T
Q  123 agtatta 129  Q
    |||||||    
T  12263475 agtatta 12263469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 163
Target Start/End: Original strand, 27949373 - 27949454
Alignment:
Q  82 caaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    |||||||||||  ||||||||||||||  ||||| ||||| ||||||| ||| | |||| ||||||||||||| ||| ||||    
T  27949373 caaagtgtagacccacaatgatttaaactaataagagagtgagtattagagagagtgttcaaaagagagtgttgctagcatt 27949454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 17354662 - 17354598
Alignment:
Q  27 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtag 91  Q
    |||| ||||||||| |||   |||||||||| ||||||| ||||||| |||||||||||||||||    
T  17354662 tcttttattggatgaaatcaatgtatgtcccaccactttatgtgggttctatttccaaagtgtag 17354598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 19422921 - 19422869
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtat 127  Q
    |||||| | |||||||||| |||||||||||||| |||||||||||| |||||    
T  19422921 ctattttcgaagtgtagatccacaatgatttaaaccaataaaagagtgagtat 19422869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 25428593 - 25428477
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| |||||||   ||||||||||||||||| | ||| |||||| |  |||||||||||| |||  |||||| | || | |||||    
T  25428593 tgtatgtcccaccactttatgtgggttacatttccaaagtgtagatcctacattgattttatccaataaaagagtgagtgctaaagagagtgctcaaaag 25428494  T
Q  147 agagtgttactaacatt 163  Q
    |||||||| ||| ||||    
T  25428493 agagtgttgctatcatt 25428477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 59 - 154
Target Start/End: Original strand, 39254160 - 39254255
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||| ||| | ||||  ||| ||||||  |||||| |||||||||||||| ||||| ||| ||||||| | |||| |||||||| ||||    
T  39254160 ccactttgtgttggttcaatttttaaaatgtagacccacaataatttaaatcaataagagagtgagtgttaaagagagtgttcaaaagagaatgtt 39254255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 154
Target Start/End: Original strand, 32205118 - 32205248
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||  ||| ||||||||||| | ||||  ||||| ||| |  |||||||||||||  ||||| ||||| |    
T  32205118 cactcttttattggatgaaatcaatgtatgtcctaccattttgtgtgggttcaatttttaaagtataggtctacaatgatttaaactaataagagagtga 32205217  T
Q  124 gtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| |||  ||||| |||||| ||||||    
T  32205218 gtattagagaggatgttcaaaagaaagtgtt 32205248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 163
Target Start/End: Original strand, 2911854 - 2911943
Alignment:
Q  75 ctatttccaaagtgt-agattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    ||||||| ||||||| |||| ||| |||||||||  |||||||| ||| ||||||  ||| | |||| |||||| |||||||||||||||    
T  2911854 ctatttctaaagtgtgagatccaccatgatttaagccaataaaaaagtgagtattggagagagtgttgaaaagaaagtgttactaacatt 2911943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 23564149 - 23564076
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||| | ||||||||| || || |||||| |||||||||||| |||  | ||||||| ||||||||||||    
T  23564149 tgtatgtcgcaccactttgtatgagttctattttcaaagtgtagatccactgtaatttaaaccaataaaagagt 23564076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 154
Target Start/End: Original strand, 32605410 - 32605503
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||| | | ||||  |||||||||  |||||||||||||||| ||||| || || | ||||||||||  |||| |||||||| ||||    
T  32605410 actttgtgtggattcaatttttaaagtgtaggctcacaatgatttaaattaataagagggtaaatattaaagaagttgttcaaaagagaatgtt 32605503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 7459450 - 7459494
Alignment:
Q  89 tagattcacaatgatttaaatcaataaaagagttagtattaaaga 133  Q
    ||||| |||||| ||||||| |||||||||||| |||||||||||    
T  7459450 tagatccacaataatttaaaccaataaaagagtgagtattaaaga 7459494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 16948603 - 16948524
Alignment:
Q  88 gtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 167  Q
    |||||| ||||||||||||||||||||| ||||| ||||||| |||||||||| || |||||||||| ||| ||||||||    
T  16948603 gtagatccacaatgatttaaatcaataagagagtgagtattagagaaaatgttcaacagagagtgttgctagcattcctc 16948524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 30679025 - 30678906
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||||||||||| | |||| ||||||||||| ||||||||||||||  |||||| ||||| ||| ||| ||| | || | |||| |    
T  30679025 tgtatgtcccaccactttgtgtgggttcaattttcaaagtgtagactcacaatgatttaagccaataagagagtgagtgttagagagagtgctcaaaaaa 30678926  T
Q  148 gagtgttactaacattcctc 167  Q
    ||||||| ||| ||||||||    
T  30678925 gagtgttgctagcattcctc 30678906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 15928594 - 15928725
Alignment:
Q  21 acccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    |||||||||| |||| |||||||| | |||||||| | ||| |||||||| || |||||| ||| ||||||| | ||| ||||||||| |||||||||||    
T  15928594 acccactcttttatttgatggaattcatgtatgtctcaccattttgtgtgagttctattttcaaggtgtagacttacagtgatttaaaccaataaaagag 15928693  T
Q  121 ttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    | ||||||  ||| | |||| |||||||||||||    
T  15928694 tgagtatt--agagagtgttcaaaagagagtgtt 15928725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 49 - 169
Target Start/End: Original strand, 8899081 - 8899201
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    ||||||||| || |||||||||||| | |||| |||||||||| | |||||| ||||||| |||||| ||||| ||||||| ||| | |||| |||||||    
T  8899081 gtatgtcccacccctttgtgtgggttcaattttcaaagtgtaggtccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagag 8899180  T
Q  149 agtgttactaacattcctcat 169  Q
    | |||| ||| |||| |||||    
T  8899181 attgttgctagcattactcat 8899201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 22540434 - 22540534
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || ||||||||||||||||||| | |||||||||||| |||||    ||||||||||||||| | |||| ||||||    
T  22540434 tgtatgtcccaccactttatgcgagttctatttccaaagtgtagatccgcaatgatttaaaccaata----agttagtattaaagagagtgttcaaaaga 22540529  T
Q  148 gagtg 152  Q
    |||||    
T  22540530 gagtg 22540534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 26980376 - 26980270
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||| |||||||| || | |||| |||| | || || ||||||||||||||||||||| ||||| ||||||| ||| | |||| ||||||    
T  26980376 tgtatgtcccaccattttgtgtgagttcaattttcaaaatatacatccacaatgatttaaatcaataagagagtgagtattatagagagtgttgaaaaga 26980277  T
Q  148 gagtgtt 154  Q
    |||||||    
T  26980276 gagtgtt 26980270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 167
Target Start/End: Original strand, 25543408 - 25543524
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||||| ||||||||||| |||  |||| |||| ||| ||  ||||||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||||    
T  25543408 tatgtcccaccactttgtgtaggta-tattcccaatgtgcagcctcacaatgatttaaaccaataagatagtgagtattagagagagtgttcaaaagaga 25543506  T
Q  150 gtgttactaacattcctc 167  Q
    |||||||||||| |||||    
T  25543507 gtgttactaacactcctc 25543524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 37553035 - 37552978
Alignment:
Q  76 tatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaaga 133  Q
    ||||| |||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  37553035 tattttcaaagtgtagatccacaatgatttaaatcaataagagagtgagtattaaaga 37552978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 77 - 151
Target Start/End: Original strand, 15906505 - 15906579
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 151  Q
    |||| |||| |||||||| ||||||||||||||||||||| || | ||||||| ||| |||||| ||||||||||    
T  15906505 atttacaaaatgtagatttacaatgatttaaatcaataaacgaatgagtattagagataatgttaaaaagagagt 15906579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 41948249 - 41948159
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    ||||||||||| ||| | |||| ||||||||| || ||||||||||||||||||||| ||||| ||| ||| ||| | |||| ||||||||    
T  41948249 ccactttgtgttggttcaattttcaaagtgtaaatccacaatgatttaaatcaataagagagtgagtgttagagagagtgttcaaaagaga 41948159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 158
Target Start/End: Original strand, 2225263 - 2225400
Alignment:
Q  21 acccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    |||||||||| ||||||||| |||   |||||||||| ||||||||||||||| |  ||| |||||||||||   ||| ||||||||| |||||| | ||    
T  2225263 acccactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcggtttacaaagtgtagaccgacagtgatttaaaccaataagaaag 2225362  T
Q  121 ttagtattaaagaaaatgtttaaaagagagtgttacta 158  Q
    | ||||| | | |   |||| |||||||||||||||||    
T  2225363 tgagtatcacaaagcgtgttcaaaagagagtgttacta 2225400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 14094115 - 14093995
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||||||| ||||||| | ||||||||||||||| | | ||| |||||| | ||||| ||| ||| ||| ||| | | | |||| |||||    
T  14094115 tgtatgtcccaccactttatgtgggttccatttccaaagtgtaggtcctacattgatttcactcaatcaaaaagtgagtgttacaaagagtgttcaaaag 14094016  T
Q  147 agagtgttactaacattcctc 167  Q
    |||||||| ||||||||||||    
T  14094015 agagtgttgctaacattcctc 14093995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 8741322 - 8741231
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||| | |||| |||||| || |  ||||||||||||||  ||||| ||||| ||||||| ||||| |||| |||||||||||||    
T  8741322 tttgtgtgggttcaattttcaaagtataaacacacaatgatttaaactaataagagagtgagtattagagaaattgttcaaaagagagtgtt 8741231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 151
Target Start/End: Complemental strand, 19101715 - 19101612
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || |||||| ||||||||||||   |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  19101715 tgtatgtcccaccactttatgcgagttctattttcaaagtgtagatctgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 19101616  T
Q  148 gagt 151  Q
    ||||    
T  19101615 gagt 19101612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 159
Target Start/End: Complemental strand, 32211898 - 32211787
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||  | |||||||||| || | ||||  || |||||||  |||||||||||||| |||||| ||||| |  |||||||||| |||| ||||||    
T  32211898 tgtatgtccaactactttgtgtgagttcaatttttaaggtgtagacccacaatgatttaaaccaataagagagtgatcattaaagaaagtgttgaaaaga 32211799  T
Q  148 gagtgttactaa 159  Q
    ||||||| ||||    
T  32211798 gagtgttgctaa 32211787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 154
Target Start/End: Complemental strand, 39974279 - 39974208
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    |||||| ||||| ||||||||||||| |||||| ||||| ||||||| | | |||||| |||||||||||||    
T  39974279 aaagtgcagatttacaatgatttaaaccaataagagagtgagtattagaaagaatgttcaaaagagagtgtt 39974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 50 - 120
Target Start/End: Complemental strand, 3872746 - 3872676
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    |||||| | ||||||||||| ||| | ||||||||||||||||  |||||||||| ||| |||||||||||    
T  3872746 tatgtcacaccactttgtgtaggttcaatttccaaagtgtagacccacaatgattcaaaccaataaaagag 3872676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 15523276 - 15523375
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || ||||||| ||||||||||| | |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  15523276 tgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 15523371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 151
Target Start/End: Original strand, 15531270 - 15531369
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| ||||||| || | || ||||||| ||||||||||| | |||||||||||| |||||    ||||||||||| ||| | |||| ||||||    
T  15531270 tgtatgtcccaccactttatgcgagttctatttctaaagtgtagatccgcaatgatttaaaccaata----agttagtattagagagagtgttcaaaaga 15531365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 163
Target Start/End: Complemental strand, 6133736 - 6133624
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||||| |||  |||||||||| | |||| |||||| || |  |||||||||| ||| |||||| ||||| ||||||| |||  ||||| ||||||||    
T  6133736 tatgtcccaccatattgtgtgggttcaattttcaaagtctacacccacaatgatt-aaaccaataagagagtgagtattagagaggatgttcaaaagaga 6133638  T
Q  150 gtgttactaacatt 163  Q
    ||||| ||||||||    
T  6133637 gtgttgctaacatt 6133624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 169
Target Start/End: Original strand, 11987692 - 11987813
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    ||||||| || |||||| ||| |||| | |||| |||||||||||  |||||||||||||| || ||| |||||   ||||| | | | |||||||||||    
T  11987692 tgtatgttccaccacttagtgcgggttcaattttcaaagtgtagacccacaatgatttaaaccattaagagagtggatattagaaagagtgtttaaaaga 11987791  T
Q  148 gagtgttactaacattcctcat 169  Q
    ||||||| ||| |||| |||||    
T  11987792 gagtgttgctagcattactcat 11987813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 15468299 - 15468388
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagag 150  Q
    ||||||||||||| | |||| || ||||||||  |||||| |||||||| ||||||||||| ||||||  ||| | |||| |||||||||    
T  15468299 actttgtgtgggttcaattttcatagtgtagacccacaataatttaaattaataaaagagtaagtatttgagatagtgttcaaaagagag 15468388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 170
Target Start/End: Original strand, 28109967 - 28110056
Alignment:
Q  82 caaagtgtagattc-acaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctcatg 170  Q
    |||||||||||| | | |||||||| |  |||||||| ||| ||||||| ||||| |  ||||||||||||||| |||||||||||||||    
T  28109967 caaagtgtagatcctagaatgatttcatccaataaaaaagtgagtattagagaaagtacttaaaagagagtgttcctaacattcctcatg 28110056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 129
Target Start/End: Original strand, 41958149 - 41958230
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| ||| |||||| |||| | |||| |||||||||||  |||| ||||||||| |||||| ||||| |||||||    
T  41958149 tgtatgtcccaccattttgtgggggttcaattttcaaagtgtagacccacagtgatttaaaccaataagagagtgagtatta 41958230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 107
Target Start/End: Original strand, 24911508 - 24911588
Alignment:
Q  27 tcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaa 107  Q
    |||| |||| |||| ||| | |||||||||| ||||||| |||||||  |||||||||||| ||||| | |||||||||||    
T  24911508 tcttttattcgatgaaatccatgtatgtcccaccactttttgtgggttttatttccaaagtatagatacgcaatgatttaa 24911588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 140
Target Start/End: Original strand, 33193116 - 33193208
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtt 140  Q
    ||||||| || ||| |||||| |||| | |||| |||||||||||  |||||||||||||| |||||| ||| | ||||||| ||||| ||||    
T  33193116 tgtatgtgccaccattttgtgagggttcaattttcaaagtgtagacccacaatgatttaaaccaataagagaatgagtattagagaaagtgtt 33193208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 10659871 - 10659762
Alignment:
Q  59 ccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttacta 158  Q
    ||||||||||| ||| | |||| |||||||||||  ||| |||||||||| |||||| |||| | |||||| ||||| |||| |||||| | |||| |||    
T  10659871 ccactttgtgtaggttcaattttcaaagtgtagacccacgatgatttaaaccaataagagag-tggtattagagaaagtgttcaaaagaaaatgttgcta 10659773  T
Q  159 acattcctcat 169  Q
     |||| |||||    
T  10659772 gcattactcat 10659762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 129
Target Start/End: Complemental strand, 12767407 - 12767361
Alignment:
Q  83 aaagtgtagattcacaatgatttaaatcaataaaagagttagtatta 129  Q
    |||||||||| ||| ||||||||||| |||||||||||| |||||||    
T  12767407 aaagtgtagactcataatgatttaaaccaataaaagagtgagtatta 12767361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 146
Target Start/End: Original strand, 33114037 - 33114135
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||| ||| ||| ||| ||| | |||| |||||||||||| || ||||||||||| |||||||| ||| |||  || ||| | ||||||||||    
T  33114037 tgtatgtcccaccattttatgtaggttcaattttcaaagtgtagatccagaatgatttaaaccaataaaaaagtgagtcctatagagagtgtttaaaag 33114135  T

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Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 28218186 - 28218081
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||| | ||||||||||||| | | |||| |||||||||||  |||| | |||||||| ||||| | ||| |    
T  28218186 cactcttttattggatgaaatcaatgtatgtctcaccactttgtgtggattcaattttcaaagtgtagaaccacagtaatttaaattaataagatagtga 28218087  T
Q  124 gtatta 129  Q
    ||||||    
T  28218086 gtatta 28218081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 47644396 - 47644339
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagag 120  Q
    ||||||||||| |||||| ||| ||||| |  ||||||||||||||||||||| ||||    
T  47644396 tttgtgtgggttctattttcaatgtgtaaacccacaatgatttaaatcaataagagag 47644339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 931487 - 931559
Alignment:
Q  95 cacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacattcctc 167  Q
    |||||||||||||| |||||||||||| | ||||| | ||| |||| |||  |||||||| ||| ||||||||    
T  931487 cacaatgatttaaaccaataaaagagtgaatattagaaaaagtgttaaaagaagagtgttgctagcattcctc 931559  T

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Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 48 - 108
Target Start/End: Complemental strand, 1093187 - 1093127
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaa 108  Q
    ||||||| || ||||||||| || ||  |||||||||||||||| | ||||||||||||||    
T  1093187 tgtatgttccaccactttgtatgagttatatttccaaagtgtagttccacaatgatttaaa 1093127  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 113
Target Start/End: Original strand, 49730943 - 49730995
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaat 113  Q
    ||||||||||||| | |||| |||||||||||  |||||||||||||| ||||    
T  49730943 actttgtgtgggttcaattttcaaagtgtagacccacaatgatttaaaccaat 49730995  T

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Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 24 - 129
Target Start/End: Complemental strand, 5413875 - 5413770
Alignment:
Q  24 cactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtta 123  Q
    ||||||| ||||||||| |||   |||||||||| ||||||||||||||| | |||| |||||||||||  || ||||||||||| |||||||| ||| |    
T  5413875 cactcttttattggatgaaatcaatgtatgtcccaccactttgtgtgggttcaatttacaaagtgtagacccataatgatttaaaccaataaaaaagtga 5413776  T
Q  124 gtatta 129  Q
    ||||||    
T  5413775 gtatta 5413770  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 163
Target Start/End: Complemental strand, 28611893 - 28611777
Alignment:
Q  47 gtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaag 146  Q
    |||||||||||  |||||||| || || | ||||  ||||||||||  |||||||||||||||||||||||||||| || ||| ||| | || | |||||    
T  28611893 gtgtatgtcccatcactttgtatgagttccatttttaaagtgtagacgcacaatgatttaaatcaataaaagagttggtgttagagagagtgctcaaaag 28611794  T
Q  147 agagtgttactaacatt 163  Q
    |||||||| ||| ||||    
T  28611793 agagtgttgctagcatt 28611777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 154
Target Start/End: Original strand, 4714830 - 4714921
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||| |||||| |||| ||||||| |||||||||||| | |||||||||||    ||||| ||| |||||| |||||||||||||    
T  4714830 tttgtgtgggttctattttcaaaatgtagatacacaatgatttataccaataaaagagaacatattagagagaatgttcaaaagagagtgtt 4714921  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 34384805 - 34384690
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||||| | | |||||||| || | |||| |||| | |||| ||||||||||||| | | |||||||||| ||||||||||| | |||| ||||||    
T  34384805 tgtatgtcccactattttgtgtgagttcaattttcaaattatagactcacaatgatttagaccgataaaagagtgagtattaaagagagtgttcaaaaga 34384706  T
Q  148 gagtgttactaacatt 163  Q
    ||||| ||||| ||||    
T  34384705 gagtgctactaccatt 34384690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 41330532 - 41330422
Alignment:
Q  23 ccactcttctattggatggaatacgtgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagtt 122  Q
    |||||||| |||| |||| |||   ||||||||||  |||||||||| ||| | |||| ||||||||||| ||||||||||||||| |||||| | |  |    
T  41330532 ccactcttttattagatgaaattaatgtatgtcccatcactttgtgtaggttcaattttcaaagtgtagactcacaatgatttaaaccaataagaaatgt 41330433  T
Q  123 agtattaaaga 133  Q
    |||||||||||    
T  41330432 agtattaaaga 41330422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 154
Target Start/End: Complemental strand, 28490835 - 28490730
Alignment:
Q  49 gtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagag 148  Q
    ||||||||| |||||||||||  || | ||||  ||||||||||  |||||| ||||||| |||||| ||||| ||||||| ||| | |||| |||||||    
T  28490835 gtatgtcccaccactttgtgtaagttcaattttgaaagtgtagacccacaataatttaaaccaataagagagtgagtattagagagagtgttcaaaagag 28490736  T
Q  149 agtgtt 154  Q
    ||||||    
T  28490735 agtgtt 28490730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 153
Target Start/End: Complemental strand, 30325988 - 30325883
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||| | ||||||| || | || |||| |||||||||||||| | |||||||||||| |||||| | ||| ||||||| ||| | |||| ||||||    
T  30325988 tgtatgtctcaccactttatgcgagttctatctccaaagtgtagatccgcaatgatttaaaccaataagaaagtgagtattagagagagtgttcaaaaga 30325889  T
Q  148 gagtgt 153  Q
    ||||||    
T  30325888 gagtgt 30325883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 43405459 - 43405532
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||| | ||||||||| |  || ||||||||||||||||||  ||||||||||||||||||||| |||||    
T  43405459 tgtatgtctcaccactttgtatatgttctatttccaaagtgtagacccacaatgatttaaatcaataagagagt 43405532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 75 - 163
Target Start/End: Complemental strand, 17434936 - 17434849
Alignment:
Q  75 ctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgttactaacatt 163  Q
    ||||||| ||||||||||  |||| ||||||||| |||||||||||| |  |||| || | ||||||||||||||||||| ||||||||    
T  17434936 ctatttctaaagtgtagacccacattgatttaaaccaataaaagagtgaacattagag-agatgtttaaaagagagtgttgctaacatt 17434849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 154
Target Start/End: Original strand, 25919279 - 25919383
Alignment:
Q  50 tatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagaga 149  Q
    |||||| | ||| ||||||||||  | |||| ||||||||||| ||||||||||||||| |||||||| | | | ||||||||||| | || ||||||||    
T  25919279 tatgtctcaccattttgtgtgggatcaattttcaaagtgtagactcacaatgatttaaaccaataaaaaaatgaatattaaagaaagtattcaaaagaga 25919378  T
Q  150 gtgtt 154  Q
     ||||    
T  25919379 atgtt 25919383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 28090340 - 28090270
Alignment:
Q  51 atgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| |||||||||||| || | |||| |||||| |||||  ||||||||||||| ||||||||||||    
T  28090340 atgtcccaccactttgtgtgagttcaattttcaaagtttagatcaacaatgatttaaaccaataaaagagt 28090270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 10142090 - 10142017
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||||| ||||||||||| ||| | |||| |||||||||||   ||||| |||||||||||||| |||||    
T  10142090 tgtatgtcccaccactttgtgttggttccattttcaaagtgtagaccaacaattatttaaatcaataagagagt 10142017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 121
Target Start/End: Original strand, 34368426 - 34368499
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| || ||||||||||||||| |  ||| |||||||||||  |||||||||||||| |||||| |||||    
T  34368426 tgtatgttccaccactttgtgtgggttcatttttcaaagtgtagacccacaatgatttaaaccaataagagagt 34368499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 154
Target Start/End: Complemental strand, 28223875 - 28223784
Alignment:
Q  63 tttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||||  | |||| |||||| ||||  || ||||||||||| |||||||||||| ||||||| |||  ||||| ||||||| |||||    
T  28223875 tttgtgtgggctcaattttcaaagtatagacccataatgatttaaaccaataaaagagtgagtattagagaggatgttcaaaagagggtgtt 28223784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 1923666 - 1923560
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaaga 147  Q
    |||||||| | |||||||||||| || | ||||  ||||||||| || ||||||||||||| |||||| | | | ||||||| |||  ||||| |||| |    
T  1923666 tgtatgtcacaccactttgtgtgagttcaatttttaaagtgtagttttacaatgatttaaaccaataagataatgagtattagagatgatgttcaaaaaa 1923567  T
Q  148 gagtgtt 154  Q
    |||||||    
T  1923566 gagtgtt 1923560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 13381881 - 13381791
Alignment:
Q  61 actttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagt 151  Q
    |||||| |||||| |||||||||||  ||| |   | |||||||||||||||||||| ||| | ||||||| | | |||||||||||||||    
T  13381881 actttgagtgggttctatttccaaaacgtaaacctataatgatttaaatcaataaaaaagtgaatattaaaaatattgtttaaaagagagt 13381791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 27592566 - 27592493
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    |||||||| | ||||||| || | || |||||||||||||||||||   |||||||||||| |||||| |||||    
T  27592566 tgtatgtctcaccactttatgcgagttctatttccaaagtgtagatctgcaatgatttaaaccaataagagagt 27592493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 36337975 - 36337935
Alignment:
Q  77 atttccaaagtgtagattcacaatgatttaaatcaataaaa 117  Q
    ||||||||||||||||  |||||||||||||| ||||||||    
T  36337975 atttccaaagtgtagacccacaatgatttaaaccaataaaa 36337935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0194 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 154
Target Start/End: Complemental strand, 8489 - 8419
Alignment:
Q  84 aagtgtagattcacaatgatttaaatcaataaaagagttagtattaaagaaaatgtttaaaagagagtgtt 154  Q
    ||||||||| ||| ||||||||||| |||||||||| ||||||||||||| | | || |||||||||||||    
T  8489 aagtgtagactcataatgatttaaaccaataaaagaattagtattaaagagagtattcaaaagagagtgtt 8419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 121
Target Start/End: Complemental strand, 26976 - 26903
Alignment:
Q  48 tgtatgtcccgccactttgtgtgggtgctatttccaaagtgtagattcacaatgatttaaatcaataaaagagt 121  Q
    ||||||| || ||||||||||||||| | |||| ||||| |||||  || |||| |||||| ||||||||||||    
T  26976 tgtatgttccaccactttgtgtgggttcaattttcaaagcgtagacccataatgctttaaaccaataaaagagt 26903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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