View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18459_low_7 (Length: 304)
Name: NF18459_low_7
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18459_low_7 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 19 - 304
Target Start/End: Complemental strand, 34256043 - 34255758
Alignment:
| Q |
19 |
cttaatacgaaaatgcaacataaacataatacaatgaagttactgaaatgaaatgtattctgctatgtccaacaagtcaagcaaaattataaactaaaac |
118 |
Q |
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| T |
34256043 |
cttaatacgaaaatgcaacataaacataatacaatgaagttactgaaatgaaatgtattctgctatgtccaacaagtcaagcaaaattataaactaaaac |
34255944 |
T |
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| Q |
119 |
cgtatatgtcgaaaccgccaattaacctgtattgctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagc |
218 |
Q |
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| T |
34255943 |
cgtatatgtcgaaaccgccaattaacctgtattgctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagc |
34255844 |
T |
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| Q |
219 |
ttttcaagttgatcacacaaggttgcattgtttccttccagttttagtgcagaaacaacttcaccccatttcttttcttgatcaac |
304 |
Q |
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| T |
34255843 |
ttttcaagttgatcacacaaggttgcattgtttccttccagttttagtgcagaaacaacttcaccccatttcttttcttgatcaac |
34255758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 139 - 298
Target Start/End: Complemental strand, 41552467 - 41552308
Alignment:
| Q |
139 |
attaacctgtattgctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaa |
238 |
Q |
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| T |
41552467 |
attaacctgttgtggtgccagttgcaggagacctgtagaagtacaatttctcaaattcgtaaagaagataaccatagagattttcaacttgagcacataa |
41552368 |
T |
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| Q |
239 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcaccccatttcttttcttg |
298 |
Q |
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| T |
41552367 |
ggttgcattgtttccttccagttttagtgcagaaacaacttcactccatttcttttcttg |
41552308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 144
Target Start/End: Complemental strand, 41552679 - 41552554
Alignment:
| Q |
19 |
cttaatacgaaaatgcaacataaacataatacaatgaagttactgaaatgaaatgtattctgctatgtccaacaagtc-aagcaaaattataaactaaaa |
117 |
Q |
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|||||||| ||||||||||| ||||||||||||| |||||| ||||||| |||||| ||| || | |||||| |||| ||| || ||| ||||| ||| |
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| T |
41552679 |
cttaataccaaaatgcaacaaaaacataatacaa-gaagtttctgaaataaaatgtcttcggccaagtccaatcagtcaaagtaatattgtaaacaaaag |
41552581 |
T |
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| Q |
118 |
ccgtatatgtcgaaaccgccaattaac |
144 |
Q |
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| T |
41552580 |
ccgtatatgttgaaaccgccaattaac |
41552554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 140
Target Start/End: Complemental strand, 34377703 - 34377639
Alignment:
| Q |
76 |
ttctgctatgtccaacaagtcaagcaaaattataaactaaaaccgtatatgtcgaaaccgccaat |
140 |
Q |
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| T |
34377703 |
ttctgctatgtccaattagtcaagaaaaattgcaaactaaaatcgtaaatgtagaaactgccaat |
34377639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 152 - 294
Target Start/End: Complemental strand, 37557161 - 37557019
Alignment:
| Q |
152 |
gctgccagttgcaggagacctgtagaagtacaatgtctcaaatttgtacagaagttctttatagagcttttcaagttgatcacacaaggttgcattgttt |
251 |
Q |
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|||||| |||| |||| ||||||||||||||||| ||||||||||||| |||||| | ||||| |||||| | |||| || | || |||||||||| |
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| T |
37557161 |
gctgccggttggaggaaacctgtagaagtacaatttctcaaatttgtatagaagtgttgcatagatcttttcgacttgagcagataacattgcattgttg |
37557062 |
T |
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| Q |
252 |
ccttccagttttagtgcagaaacaacttcaccccatttctttt |
294 |
Q |
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| T |
37557061 |
ccttccaatttcagtgcagagacaacttcagtccatttgtttt |
37557019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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