View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18459_low_8 (Length: 289)

Name: NF18459_low_8
Description: NF18459
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18459_low_8
NF18459_low_8
[»] chr6 (14 HSPs)
chr6 (8-271)||(6526427-6526690)
chr6 (37-271)||(6505535-6505772)
chr6 (40-271)||(13035634-13035865)
chr6 (105-266)||(6465393-6465554)
chr6 (8-271)||(6472903-6473166)
chr6 (102-271)||(6516058-6516227)
chr6 (153-266)||(6523453-6523566)
chr6 (33-259)||(6461706-6461932)
chr6 (116-271)||(6528248-6528409)
chr6 (8-205)||(1841749-1841946)
chr6 (113-259)||(6496740-6496886)
chr6 (204-270)||(6520629-6520695)
chr6 (39-168)||(6520458-6520587)
chr6 (37-142)||(1822166-1822271)
[»] chr1 (3 HSPs)
chr1 (102-266)||(35231396-35231551)
chr1 (150-266)||(35243075-35243191)
chr1 (102-131)||(35243036-35243065)
[»] chr7 (1 HSPs)
chr7 (89-266)||(9665240-9665423)
[»] chr4 (1 HSPs)
chr4 (89-266)||(13536264-13536447)


Alignment Details
Target: chr6 (Bit Score: 244; Significance: 1e-135; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 8 - 271
Target Start/End: Complemental strand, 6526690 - 6526427
Alignment:
Q  8 aagcaaaggtgtgagagaaggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatct 107  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6526690 aagcaaaggtgtgagagatggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaattcatcaacaataaaaacaaaatcatct 6526591  T
Q  108 tatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttga 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||    
T  6526590 tatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttga 6526491  T
Q  208 aggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6526490 aggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 6526427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 37 - 271
Target Start/End: Complemental strand, 6505772 - 6505535
Alignment:
Q  37 atgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatc---aacaataaaaacaaaatcatcttatttttatggaaaattgattgcaag 133  Q
    |||||||||||||| |||||| ||| |||||||||||  | || | |||   ||||| | |||||||||| |||||||||||||||||||| ||||||||    
T  6505772 atgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctgcaacaaaacaaacaaaatcgtcttatttttatggaaaattaattgcaag 6505673  T
Q  134 agctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaaaccattgagccttggcttgat 233  Q
    ||| || || |||||||||||||| ||||||||||  ||| |||||||  ||  ||||||  |||| | |||||||||||||||||||||||||||||||    
T  6505672 agcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttttgaaggaaaccattgagccttggcttgat 6505573  T
Q  234 ggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    |||||||||||||||||||||||||| |||||||||||    
T  6505572 ggaacttttaatggaaatggatttctatatgataaaaa 6505535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 40 - 271
Target Start/End: Original strand, 13035634 - 13035865
Alignment:
Q  40 aaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaagagctgc 139  Q
    ||||||||||||| ||||  || ||||||||||| || || | |||| | |||| ||| | ||||||||| ||||||||||||||||| |||||||||||    
T  13035634 aaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataacaacgacatcatcttacttttatggaaaattgatagcaagagctgc 13035733  T
Q  140 aagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaaaccattgagccttggcttgatggaact 239  Q
    |||  | ||||||||| | ||||||||   || |||||||||  ||||||  ||    ||||| ||||||||| ||||||||||||||||||||||||||    
T  13035734 aaggttagcattgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaagtacttgaaggaatccattgagccttggcttgatggaact 13035833  T
Q  240 tttaatggaaatggatttctttatgataaaaa 271  Q
    |||||||||||||||||||| |||||||||||    
T  13035834 tttaatggaaatggatttctctatgataaaaa 13035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 105 - 266
Target Start/End: Complemental strand, 6465554 - 6465393
Alignment:
Q  105 tcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatt 204  Q
    ||||| |||||||| || |||||||| || ||||| ||  | || ||||| || |||||||||||||||||||||| | |||| ||| || | |||| ||    
T  6465554 tcttacttttatggcaagttgattgctagggctgctaggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattaggaagtttt 6465455  T
Q  205 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  6465454 tgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgat 6465393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 271
Target Start/End: Original strand, 6472903 - 6473166
Alignment:
Q  8 aagcaaaggtgtgagagaaggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatct 107  Q
    |||||||||||| | ||||| ||  | ||| |||||||||||||| ||||  || ||||||||  | || || | |||| | |||| ||||  |||||||    
T  6472903 aagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttgagagtctaaagtcatcaccgataacaacagcatcatct 6473002  T
Q  108 tatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttga 207  Q
    || ||||||||||||||||| ||||| ||||| ||  | ||||||||||| ||||||||   || |||||||||  ||||||  ||    || |||||||    
T  6473003 tacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaagaggtgaattaccttgatgcaattccaattgtgaagaaatatttga 6473102  T
Q  208 aggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    ||||| |||  ||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  6473103 aggaatccaccgagccttggctcgatggaacatttaatggaaatggatttctctatgataaaaa 6473166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 102 - 271
Target Start/End: Original strand, 6516058 - 6516227
Alignment:
Q  102 tcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagt 201  Q
    |||||||| || |||||| |||||||||||||||| |||||  | ||||||||||| |||||  ||| |||| |||| ||  ||| ||||||  |||  |    
T  6516058 tcatcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtcagaagct 6516157  T
Q  202 atttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
     |||||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||    
T  6516158 ttttgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaa 6516227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 266
Target Start/End: Complemental strand, 6523566 - 6523453
Alignment:
Q  153 atagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatg 252  Q
    ||||| |||||||||||||||||||||| | || ||||||||  |||||||||||| || | ||||||||||||||||||||||||||| ||   |||||    
T  6523566 atagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggcttgatggaactttcaaataaaatg 6523467  T
Q  253 gatttctttatgat 266  Q
    ||||||| ||||||    
T  6523466 gatttctatatgat 6523453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 33 - 259
Target Start/End: Original strand, 6461706 - 6461932
Alignment:
Q  33 cgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaa 132  Q
    ||||||||||| |||||| ||||||  || |||||||| || ||  ||| ||||| |||||  ||||||   ||||| | |||||| |||||||||| ||    
T  6461706 cgtgatgaaatcgtttcatcacttttaaaagatgttgagggtctagattcatcaaaaataaccacaaaagattcttactcttatggtaaattgattggaa 6461805  T
Q  133 gagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaaaccattgagccttggcttga 232  Q
    | || || ||  ||||||||||||| |||||||||| || | | |||| | ||||||| |||   |||| ||| || |||||||||||||||||| | ||    
T  6461806 gggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaagaaaccattgagccttggttaga 6461905  T
Q  233 tggaacttttaatggaaatggatttct 259  Q
    ||||||||| ||||| |||||||||||    
T  6461906 tggaactttaaatgggaatggatttct 6461932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 116 - 271
Target Start/End: Complemental strand, 6528409 - 6528248
Alignment:
Q  116 tggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcga------aagtatttgaag 209  Q
    |||||||||||||||||||||||||||| | || |||||||| |||||| ||| ||||  ||||| | ||||||| |||         ||||||||||||    
T  6528409 tggaaaattgattgcaagagctgcaagattggctttgatagctgaagagatttttttctatgatgtgattccaaaggttaaggttaagaagtatttgaag 6528310  T
Q  210 gaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaaa 271  Q
    || |  |||||||||||||||||||||||||| || || ||||||||||| |||||||||||    
T  6528309 gagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaa 6528248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 8 - 205
Target Start/End: Original strand, 1841749 - 1841946
Alignment:
Q  8 aagcaaaggtgtgagagaaggattgcgtgatgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatct 107  Q
    |||||||||||| | ||||| ||| | |||||||||||||||||| ||||  ||  ||||||||||  |||| | |||   ||||| || ||| || |||    
T  1841749 aagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctgaaataacaagaaattcttct 1841848  T
Q  108 tatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtattt 205  Q
    || |||||||| ||||  ||||| || | |||| |    ||||||||||| |||||||||||||||||||||| | ||||||||||| ||||||||||    
T  1841849 tacttttatggtaaatctattgctagggttgcatggtcggcattgatagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 1841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 113 - 259
Target Start/End: Complemental strand, 6496886 - 6496740
Alignment:
Q  113 ttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaa 212  Q
    |||||| |||||||||| ||| || || ||  ||||||||||||| ||||||||||  | | | |||| | ||||||| |||   |||| |||||| |||    
T  6496886 ttatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagtttttgaaagaa 6496787  T
Q  213 accattgagccttggcttgatggaacttttaatggaaatggatttct 259  Q
    ||||||||||||||| | ||||||||||| ||||| |||||||||||    
T  6496786 accattgagccttggttagatggaactttaaatgggaatggatttct 6496740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 204 - 270
Target Start/End: Original strand, 6520629 - 6520695
Alignment:
Q  204 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgataaaa 270  Q
    ||||||||||| |||||||||||||||||||||||||||| || |||||| ||||| ||||||||||    
T  6520629 ttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaa 6520695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 168
Target Start/End: Original strand, 6520458 - 6520587
Alignment:
Q  39 gaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaagagctg 138  Q
    |||||||||||||||||||  || |||||||| |  || |||| ||||   |||  ||||| ||| ||||||| ||||||||| |||||||| |||||||    
T  6520458 gaaattgtttcagcacttttgaaagatgttgaggatctaaattcatcagatatatcaacaacatcgtcttattcttatggaaagttgattgctagagctg 6520557  T
Q  139 caagacttgcattgatagcggaagaggttt 168  Q
    ||||  | ||| | ||||| ||||||||||    
T  6520558 caaggttagcaataatagctgaagaggttt 6520587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 142
Target Start/End: Original strand, 1822166 - 1822271
Alignment:
Q  37 atgaaattgtttcagcactttgtaaggatgttgaaggactgaatttatcaacaataaaaacaaaatcatcttatttttatggaaaattgattgcaagagc 136  Q
    ||||||||||||||||  |||  || |||||||||||  |||| | |||  |||||| |||||| || ||||| |||||| | ||||||||||| || ||    
T  1822166 atgaaattgtttcagctattttgaaagatgttgaaggtatgaactcatctgcaataacaacaaattcttcttacttttatagtaaattgattgccagggc 1822265  T
Q  137 tgcaag 142  Q
    ||||||    
T  1822266 tgcaag 1822271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 266
Target Start/End: Original strand, 35231396 - 35231551
Alignment:
Q  102 tcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagt 201  Q
    |||||||||||||||||||||||||||||||| | ||        || |||||||| |||||||||||||||||||||| | |||||||||||   ||||    
T  35231396 tcatcttatttttatggaaaattgattgcaag-gttg--------gctttgatagctgaagaggtttgtttccttgatgtgattccaaaagttaagaagt 35231486  T
Q  202 atttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    ||||||| || | |||||||||||||||||||||| || | || | |||||||||||| ||||||    
T  35231487 atttgaaagagatcattgagccttggcttgatggagctatcaaagaaaatggatttctatatgat 35231551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 266
Target Start/End: Original strand, 35243075 - 35243191
Alignment:
Q  150 ttgatagcggaagaggtttgtttccttgatgcgcttccaaaagttcgaaagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaa 249  Q
    |||||||| ||||||||||||||| |||||| | |||||||||||   ||||||||||| ||   |||||||| |||||||||||||||||| || | ||    
T  35243075 ttgatagctgaagaggtttgtttctttgatgtgattccaaaagttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttcaaagaaa 35243174  T
Q  250 atggatttctttatgat 266  Q
    ||| |||| | ||||||    
T  35243175 atgaatttgtatatgat 35243191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 102 - 131
Target Start/End: Original strand, 35243036 - 35243065
Alignment:
Q  102 tcatcttatttttatggaaaattgattgca 131  Q
    ||||||||||||||||||||||||||||||    
T  35243036 tcatcttatttttatggaaaattgattgca 35243065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 9665240 - 9665423
Alignment:
Q  89 aataaaaacaaaatcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttcca 188  Q
    ||||| ||||| ||| || || |||||||||||||||||||||||||| || || |||||||||||||| ||||| |||| |||| |||||  | |||||    
T  9665240 aataacaacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttcca 9665339  T
Q  189 aaagtt-cga-----aagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    || |||  ||     |||| |||||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| ||||||    
T  9665340 aatgttaagattaagaagtttttgaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgat 9665423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 266
Target Start/End: Original strand, 13536264 - 13536447
Alignment:
Q  89 aataaaaacaaaatcatcttatttttatggaaaattgattgcaagagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgcgcttcca 188  Q
    ||||| ||||| ||| || || |||||||||||||||||||||||||| || || |||||||||||||| ||||| |||| |||| |||||  | |||||    
T  13536264 aataacaacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttcca 13536363  T
Q  189 aaagtt-cga-----aagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctttatgat 266  Q
    || |||  ||     |||| |||||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| ||||||    
T  13536364 aatgttaagattaagaagtttttgaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgat 13536447  T

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