View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_high_12 (Length: 323)
Name: NF1845_high_12
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 309
Target Start/End: Complemental strand, 33632956 - 33632648
Alignment:
| Q |
1 |
tgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaacc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632956 |
tgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaataaatcacaactaaaaactatagaaca |
33632857 |
T |
|
| Q |
101 |
aggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33632856 |
aggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggagcc |
33632757 |
T |
|
| Q |
201 |
agaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33632756 |
agaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaagctttgtgtaat |
33632657 |
T |
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| Q |
301 |
tggttagat |
309 |
Q |
| |
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||||||||| |
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| T |
33632656 |
tggttagat |
33632648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 29192999 - 29193282
Alignment:
| Q |
1 |
tgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagtaa--taaatcacaactaaaaactatagaa |
98 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||||| ||||| |
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| T |
29192999 |
tgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaaa----tagaa |
29193094 |
T |
|
| Q |
99 |
ccaggggttgcaatttcttcacttataaaaccatagtatttgcttgttgattttttatgattgtgttccttcccaggagatcctaaaagataacaaggag |
198 |
Q |
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|||| ||||||| || | ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
29193095 |
ccagcggttgcacttgc---acttataaaaccatagtctttgcttgttgattttttctgattgtgttccttcccaggagatcctgaaagatgacaaggag |
29193191 |
T |
|
| Q |
199 |
ccagaacctttaaatattgactttggttcagaaatttcatctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag |
289 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29193192 |
ccggaacctttaaatattgactttggttcagaaatttcgtctcagtcagaatttatgtcaacaaacaagcactcttacaggtataaaaaag |
29193282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 29182903 - 29183063
Alignment:
| Q |
1 |
tgaggtttccatcaatctatgaaacacaatcattcattggtgctttgaaggtaaaagatgcttatcatagt--aataaatcacaactaaaaactatagaa |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||| |||||| |
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| T |
29182903 |
tgaggtttccatcaatctatgaaacacaatcattcatcagtgctttgaaggtaaaagatgcttaacatactaaaataaatcacaactaaa----atagaa |
29182998 |
T |
|
| Q |
99 |
ccaggggttgcaatttc---------ttcacttataaaaccatagtatttgcttgttgatttttt |
154 |
Q |
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|||| ||||||| || | | |||||||||||||||||| |||||||||||||||||| |
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| T |
29182999 |
ccagcggttgcacttgcacttgcacttgcacttataaaaccatagtctttgcttgttgatttttt |
29183063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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