View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_high_19 (Length: 252)

Name: NF1845_high_19
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_high_19
NF1845_high_19
[»] chr3 (7 HSPs)
chr3 (18-252)||(27632300-27632534)
chr3 (18-158)||(34516342-34516482)
chr3 (151-252)||(34517225-34517326)
chr3 (18-113)||(34525538-34525633)
chr3 (151-251)||(27616853-27616953)
chr3 (151-252)||(34505638-34505739)
chr3 (151-243)||(34526410-34526502)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 27632300 - 27632534
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27632300 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggtaaccgctttagaattcagatattgcta 27632399  T
Q  118 gaattaaataaacatgttctaagagatgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggca 217  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27632400 gaaataaataaacatgttctaagagacgaagagtatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggca 27632499  T
Q  218 ttgctgatggtatcttcttcatctgagagcatatc 252  Q
    |||||||||||||||||||||||||||||||||||    
T  27632500 ttgctgatggtatcttcttcatctgagagcatatc 27632534  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 158
Target Start/End: Original strand, 34516342 - 34516482
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34516342 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatattgcta 34516441  T
Q  118 gaattaaataaacatgttctaagagatgaagagtatagact 158  Q
    ||| ||||||||| |||||||||||| ||||||||||||||    
T  34516442 gaaataaataaacttgttctaagagacgaagagtatagact 34516482  T

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Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 34517225 - 34517326
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34517225 tatagactgcaaaggatcatacctttttgcaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 34517324  T
Q  251 tc 252  Q
    ||    
T  34517325 tc 34517326  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 34525538 - 34525633
Alignment:
Q  18 attaatgtgtataaagtactcaaaatcaatgcagaaaatagttaatagagaatgtttggaatgtattacaggttaccgctttagaattcagatatt 113  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  34525538 attaatgtgtataaagtactcaaaatcaatacaacaaatatttaaaagagaatgtttggaatgtattacaggttaccactttagaattcaaatatt 34525633  T

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Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 151 - 251
Target Start/End: Original strand, 27616853 - 27616953
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    |||||||| ||||||| |||||||||||| |||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  27616853 tatagacttcaaaggaccatacctttttgcaatggatgtgtctttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata 27616952  T
Q  251 t 251  Q
    |    
T  27616953 t 27616953  T

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Target: chr3; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 151 - 252
Target Start/End: Original strand, 34505638 - 34505739
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctgagagcata 250  Q
    |||||||| ||||||| |||||||||||| |||||||||||| | | ||| |||||||||||||||||| ||||| |||||||||||||||||||| |||    
T  34505638 tatagacttcaaaggaccatacctttttgcaatggatgtgtcgttttcaacgacaacatctgaggcatttctgattgtatcttcttcatctgagagaata 34505737  T
Q  251 tc 252  Q
    ||    
T  34505738 tc 34505739  T

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Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 151 - 243
Target Start/End: Original strand, 34526410 - 34526502
Alignment:
Q  151 tatagactgcaaaggatcatacctttttggaatggatgtgtcttctgcaatgacaacatctgaggcattgctgatggtatcttcttcatctga 243  Q
    |||||| |||||||||  ||||||||||| |||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||||||    
T  34526410 tatagaatgcaaaggacaatacctttttgcaatggatgtgtcgtttgcaacgacatcatctgaggcattgctgatggtatcttcttcatctga 34526502  T

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