View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1845_high_22 (Length: 251)

Name: NF1845_high_22
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1845_high_22
NF1845_high_22
[»] chr6 (4 HSPs)
chr6 (135-232)||(19648521-19648618)
chr6 (130-189)||(6054428-6054488)
chr6 (27-191)||(2736164-2736331)
chr6 (3-57)||(10145649-10145703)
[»] chr2 (2 HSPs)
chr2 (130-187)||(13486359-13486417)
chr2 (26-76)||(42895630-42895680)
[»] chr4 (1 HSPs)
chr4 (130-189)||(18528216-18528276)
[»] chr8 (1 HSPs)
chr8 (105-187)||(28069358-28069441)
[»] chr5 (2 HSPs)
chr5 (130-169)||(15590199-15590238)
chr5 (30-62)||(35167525-35167557)
[»] chr7 (1 HSPs)
chr7 (128-169)||(44874366-44874407)


Alignment Details
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 19648521 - 19648618
Alignment:
Q  135 tcacctcacagactgattttgtagggttgtgttagacgtaccacga-tttctaagaataatagttttactctttctagtttttaattcactcactcact 232  Q
    |||||||||||||   ||| || ||| |||||||||| |||||| | ||||||||||| ||||||||| |||||||| ||||| |||||||||||||||    
T  19648521 tcacctcacagaccagtttagtggggctgtgttagacctaccactaatttctaagaattatagttttattctttcta-tttttcattcactcactcact 19648618  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 189
Target Start/End: Original strand, 6054428 - 6054488
Alignment:
Q  130 aatcctcacctcacagactgattttgtagggttgtgttaga-cgtaccacgatttctaaga 189  Q
    ||||||||||||||| || |||||||||||||||||||||| |  ||||||||||||||||    
T  6054428 aatcctcacctcacaaaccgattttgtagggttgtgttagacccaaccacgatttctaaga 6054488  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 191
Target Start/End: Complemental strand, 2736331 - 2736164
Alignment:
Q  27 catttatatccacgctccagatgtccagtccaaggcaagagaggttgtgttgagagtctcacatcag--aggagaatgcttgacaatgtatttataacta 124  Q
    ||||||| |||||||||||||||| ||||||   ||  ||| || ||||||||||||| |||||| |  ||||||   | ||||||||| ||||||| |     
T  2736331 catttatgtccacgctccagatgttcagtcctgtgcgtgagggggtgtgttgagagtcccacatcgggtaggagatgacctgacaatgtgtttataagtg 2736232  T
Q  125 acagaaatcctcacctcacagactgattttgtagggttgtgttaga-cgtaccacgatttctaagaat 191  Q
         ||||||||||||| | || ||||||||||| |||||||||| |  ||||||||||||||||||    
T  2736231 gggacaatcctcacctcataaacagattttgtaggattgtgttagacccaaccacgatttctaagaat 2736164  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 10145703 - 10145649
Alignment:
Q  3 ggttttcgttatcggatcgctctccatttatatccacgctccagatgtccagtcc 57  Q
    ||||| ||||||| || ||| |||||||||| ||||| |||||||||||||||||    
T  10145703 ggtttccgttatcagaccgccctccatttatgtccactctccagatgtccagtcc 10145649  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 187
Target Start/End: Original strand, 13486359 - 13486417
Alignment:
Q  130 aatcctcacctcacagactgattttgtagggttgtgttagacgt-accacgatttctaa 187  Q
    ||||||||||||||| ||||||||||| |||||||||||| | | ||||||||||||||    
T  13486359 aatcctcacctcacaaactgattttgtggggttgtgttaggcctaaccacgatttctaa 13486417  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 42895630 - 42895680
Alignment:
Q  26 ccatttatatccacgctccagatgtccagtccaaggcaagagaggttgtgt 76  Q
    |||||||||||||||||||||||||||| ||| ||||| ||| || |||||    
T  42895630 ccatttatatccacgctccagatgtccaatcctaggcatgagggggtgtgt 42895680  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 189
Target Start/End: Complemental strand, 18528276 - 18528216
Alignment:
Q  130 aatcctcacctcacagactgattttgtagggttgtgttaga-cgtaccacgatttctaaga 189  Q
    ||||||||||||||| |  |||||||||||||||||||||| |  ||||||||||||||||    
T  18528276 aatcctcacctcacaaatcgattttgtagggttgtgttagatccaaccacgatttctaaga 18528216  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 187
Target Start/End: Complemental strand, 28069441 - 28069358
Alignment:
Q  105 tgacaatgtatttataactaacagaaatcctcacctcacagactgattttgtagggttgtgttaga-cgtaccacgatttctaa 187  Q
    ||||||||||||||||| |    | ||||||||||||||| ||||||||||| | ||||||||||| |  ||||||||||||||    
T  28069441 tgacaatgtatttataagtgggggcaatcctcacctcacaaactgattttgtggagttgtgttagatccaaccacgatttctaa 28069358  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 15590199 - 15590238
Alignment:
Q  130 aatcctcacctcacagactgattttgtagggttgtgttag 169  Q
    |||||||||||||||| |||||||||| ||||||||||||    
T  15590199 aatcctcacctcacaggctgattttgtggggttgtgttag 15590238  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 62
Target Start/End: Complemental strand, 35167557 - 35167525
Alignment:
Q  30 ttatatccacgctccagatgtccagtccaaggc 62  Q
    |||||||||||||||||||||||||||| ||||    
T  35167557 ttatatccacgctccagatgtccagtcctaggc 35167525  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 44874407 - 44874366
Alignment:
Q  128 gaaatcctcacctcacagactgattttgtagggttgtgttag 169  Q
    ||||||||||||||||| || ||||||||| |||||||||||    
T  44874407 gaaatcctcacctcacaaaccgattttgtatggttgtgttag 44874366  T

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