View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1845_high_28 (Length: 242)
Name: NF1845_high_28
Description: NF1845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1845_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 3598291 - 3598099
Alignment:
| Q |
1 |
tagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattatcattaactcgattcgagatgtga |
100 |
Q |
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| T |
3598291 |
tagtcttaaaacttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaagtatcattaacttgattcgagatgtga |
3598192 |
T |
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| Q |
101 |
ctatttttagtagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgctt |
193 |
Q |
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| T |
3598191 |
ctatttttagtagtgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttatttcctctatatttcatgctt |
3598099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 4356746 - 4356973
Alignment:
| Q |
13 |
ttttatgtcaactatagtgtttttatataaaattcatcatatgttgatttcaacctctgaattatcattaactcgattcgagat--gtgactatttttag |
110 |
Q |
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| T |
4356746 |
ttttatgtcaactatagtgtttttctataatattcatcatatattgatctcaacctttgaagtatcaggaacttgagttgagatacgtgactatttttgt |
4356845 |
T |
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| Q |
111 |
tagtgaaattgagattcacatttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaata |
210 |
Q |
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||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | ||| | |||| |
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| T |
4356846 |
tagcgaaattgagattcacgtttctactactttgtctgttatttcttatatttctttctttatttcctc--tatttcatgcttatgactatgtataaata |
4356943 |
T |
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| Q |
211 |
taattttgttgaataatgtattagcctttg |
240 |
Q |
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| T |
4356944 |
tatttttgttgaataatgtattagcctttg |
4356973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 238
Target Start/End: Original strand, 24455633 - 24455738
Alignment:
| Q |
131 |
tttctactactttgtctgttatttcttatatttctttctttatttccaccatatttcatgcttatgattgtgtgtcaatataattttgttgaataatgta |
230 |
Q |
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|||||||||||| || |||||||| | |||||||| ||| |||||| | |||||||||||| |||||| || ||| || ||||||||||| ||| | |
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| T |
24455633 |
tttctactacttcgttagttatttcatctatttcttgcttcatttcctc--tatttcatgcttctgattgagtatcatcctatttttgttgaattatgca |
24455730 |
T |
|
| Q |
231 |
ttagcctt |
238 |
Q |
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|||||||| |
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| T |
24455731 |
ttagcctt |
24455738 |
T |
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